Additions to README
Method: With / without VCF
-
Total characters: Length of the optimal pair of considered haplotypes (the thing assumes diploidy, hence here 2 x chromosome length)
-
Total non-gap characters: Non-gap characters in the optimal pair of considered haplotypes
-
kMers: Number of kmers in the optimal pair of haplotypes
-
kMers invalid: Of these, invalid kmers (e.g. weird characters)
-
kMers present: Of the valid kmers, kMers recovered from the de Bruijn graph
Unweighted optimality: Proportion of kmers in the optimal pair of considered haplotypes classified as 'recovered'
-
Coverage-weighted optimality: ??
- Level: Row ID, 0-indexed
- ReferenceCoordinate: location of basepair, 1-index
- kMersInduced:
- kMersInvalid:
- kMersOK:
- InducedkMersInReference:
- DiploidChromotype:
- ChromotypeLostPhase:
- GapsAtLevel:
Additions to README
Method: With / without VCF
Total characters: Length of the optimal pair of considered haplotypes (the thing assumes diploidy, hence here 2 x chromosome length)
Total non-gap characters: Non-gap characters in the optimal pair of considered haplotypes
kMers: Number of kmers in the optimal pair of haplotypes
kMers invalid: Of these, invalid kmers (e.g. weird characters)
kMers present: Of the valid kmers, kMers recovered from the de Bruijn graph
Unweighted optimality: Proportion of kmers in the optimal pair of considered haplotypes classified as 'recovered'
Coverage-weighted optimality: ??
- Level: Row ID, 0-indexed
- ReferenceCoordinate: location of basepair, 1-index
- kMersInduced:
- kMersInvalid:
- kMersOK:
- InducedkMersInReference:
- DiploidChromotype:
- ChromotypeLostPhase:
- GapsAtLevel: