Open-source systems developed by the Campbell Muscle Lab at the University of Kentucky.
- MATMyoSim
- Huxley-type modeling of half-sarcomeres
- FiberSim
- spatially-explicit modeling of half-sarcomeres
- PyMyoVent
- a ventricle driven by a single MyoSim half-sarcomere that pumps blood around a circulation
- FiberVent
- a ventricle driven by a single FiberSim half-sarcomere that pumps blood around a circulation and grows based on hemodynamics and ATP-usage
- SLControl
- the code underlying the data acquisition system we've been using since 2000!
- SLControl utilities
- SLControl analysis
- code written in MATLAB to automate analysis of large sets of SLControl files
- SLControl MAT analysis
- new, simpler? code written in MATLAB to automate analysis of large sets of SLControl files
- SLMeasure
- A MATLAB app to help measure sarcomere length using brightfield images or camera feeds of multicellular preparations.
- Python_MyoVision
- a Python-based version of MyoVision
- GelBandFitter
- a computer program that uses non-linear regression techniques to fit mathematical functions to densitometry profiles of protein gels.
- developed by Mihail Mitov, Marion Greaser (UW-Madison) and Ken Campbell
- GelBox
- an updated workflow for analysis of gel electrophoresis and immunoblotting
- MATLAB_Utilities
- resources we use in many of our projects
- Python_Utilities
- Not as big but better documented than the MATLAB version above
- MATLAB_SAS
- code for running linear mixed models in SAS from MATLAB
- MATLAB_UKTCVR
- a suite of tools for statistics, curve-fitting, and creating publication-quality figures
- PGY630_QM
- website for PGY630: Quantitative Methods in Biomedical Sciences
- Protocols
- website for Campbell Muscle Lab protocols
Tutorials, tips and tricks, and general guidance