diff --git a/src/content/about/bergen/index.mdx b/src/content/about/bergen/index.mdx index fecf406..045952a 100644 --- a/src/content/about/bergen/index.mdx +++ b/src/content/about/bergen/index.mdx @@ -10,7 +10,7 @@ ELIXIR@UiB provides broad bioinformatics services, mainly for high-throughput om We also provide consulting on planning and design of high-throughput technology-based experiments. The biological topics in focus are based on our collaborators' research areas and these include medical research at [Haukeland University Hospital, Bergen](https://www.helse-bergen.no/en/steder/haukeland), and [Marine Biology at the Department of Biology, UiB](https://www.uib.no/en/bio/160170/fisheries-and-marine-biology-group) and the [Marine Research Institute (IMR)](https://www.hi.no). -We further develop bioinformatics analysis infrastructure including e.g. [Galaxy](https://usegalaxy.no/login/start) workflows as part of the [Norwegian e-infrastructure for Life Science (NeLS)](https://nels.bioinfo.no/), and host the NeLS core developer team. In addition, we are collaborating with the Oslo node on the storage and analysis of sensitive data. Together we have developed the [Norwegian node of the Federated European Genome-Phenome Archive (FEGA Norway)](https://ega.elixir.no/) for archiving human genomes and are now developing the [Genomic Data Infrastructure (GDI)](https://gdi.onemilliongenomes.eu/) in collaboration with other European countries in the [1+Million Genome Project (1+MG)](https://framework.onemilliongenomes.eu/). +We further develop bioinformatics analysis infrastructure including e.g. [Galaxy](https://usegalaxy.no/login/start) workflows as part of the [Norwegian e-infrastructure for Life Science (NeLS)](https://nels.elixir.no), and host the NeLS core developer team. In addition, we are collaborating with the Oslo node on the storage and analysis of sensitive data. Together we have developed the [Norwegian node of the Federated European Genome-Phenome Archive (FEGA Norway)](https://ega.elixir.no/) for archiving human genomes and are now developing the [Genomic Data Infrastructure (GDI)](https://gdi.onemilliongenomes.eu/) in collaboration with other European countries in the [1+Million Genome Project (1+MG)](https://framework.onemilliongenomes.eu/). Our main focus is on FAIR and Open Science, Data Management and Human Data. diff --git a/src/content/news/2020/a-story-of-success-elixir-norway-and-the-data-steward-wizard/index.mdx b/src/content/news/2020/a-story-of-success-elixir-norway-and-the-data-steward-wizard/index.mdx index 35fc578..8ac53b8 100644 --- a/src/content/news/2020/a-story-of-success-elixir-norway-and-the-data-steward-wizard/index.mdx +++ b/src/content/news/2020/a-story-of-success-elixir-norway-and-the-data-steward-wizard/index.mdx @@ -30,7 +30,7 @@ The DSW has been very valuable for several of our DM-training events across Norw Our users report in person and through the inbuilt feedback mechanism that these aspects have helped them to think in new terms about research data management and to directly address practical challenges. The hierarchical format of the questionnaires and the integration of key resources like [FAIRsharing](https://fairsharing.org) and [bio.tools](https://bio.tools/) into DSW have also proved very helpful for our users. -DSW is a cornerstone for us in our new BioMedData project in which we will, together with the other major Norwegian Life-Science research infrastructures, develop routines for FAIR end-to-end data management routines. In the near future we hope to make use of the machine actionable DMP features to provide a seamless experience for researchers who also use resources from EOSC-Nordic. We are also exploring if the DSW API can be used for direct interaction with our storage platform [NeLS](https://nels.bioinfo.no/). +DSW is a cornerstone for us in our new BioMedData project in which we will, together with the other major Norwegian Life-Science research infrastructures, develop routines for FAIR end-to-end data management routines. In the near future we hope to make use of the machine actionable DMP features to provide a seamless experience for researchers who also use resources from EOSC-Nordic. We are also exploring if the DSW API can be used for direct interaction with our storage platform [NeLS](https://nels.elixir.no). [**Korbinian Bösl**](https://www.uib.no/en/persons/Korbinian.Boesl), ELIXIR-Norway, Centre for Digital Life Norway, University of Bergen [**Erik Hjerde**](https://en.uit.no/ansatte/person?p_document_id=41977), ELIXIR-Norway, University of Tromsø diff --git a/src/content/news/2020/elixir-norway-has-a-new-training-coordinator/index.mdx b/src/content/news/2020/elixir-norway-has-a-new-training-coordinator/index.mdx index c0872b1..5d2e4c5 100644 --- a/src/content/news/2020/elixir-norway-has-a-new-training-coordinator/index.mdx +++ b/src/content/news/2020/elixir-norway-has-a-new-training-coordinator/index.mdx @@ -23,4 +23,4 @@ in [TeSS](https://tess.elixir-europe.org/) (ELIXIR's Training Portal) If you are interested in either participate in international ELIXIR training events, or to discuss the possibility of making your course available through ELIXIR, please -contact [contact@bioinfo.no](mailto:contact@bioinfo.no) +contact [support@elixir.no](mailto:support@elixir.no) diff --git a/src/content/news/2020/elixir-norway-hosts-analysis-workflows-for-sars-cov-2-sequence-data/index.mdx b/src/content/news/2020/elixir-norway-hosts-analysis-workflows-for-sars-cov-2-sequence-data/index.mdx index 2366b6e..ee2d5b3 100644 --- a/src/content/news/2020/elixir-norway-hosts-analysis-workflows-for-sars-cov-2-sequence-data/index.mdx +++ b/src/content/news/2020/elixir-norway-hosts-analysis-workflows-for-sars-cov-2-sequence-data/index.mdx @@ -16,9 +16,9 @@ workflows are available at the NeLS Galaxy instance hosted at NTNU. The following workflows are now available: -* [Pre-processing multiple PE samples](https://galaxy-ntnu.bioinfo.no/u/ehj000/p/covid19-preprocess-collections) -* [Pre-processing single PE samples](https://galaxy-ntnu.bioinfo.no/u/ehj000/p/preprocess-covid19-single-sample) -* [Single nucleotide variation analysis](https://galaxy-ntnu.bioinfo.no/u/ehj000/p/covid19) +* Pre-processing multiple PE samples +* Pre-processing single PE samples +* Single nucleotide variation analysis For help or questions regarding the analysis workflows, please contact the -national ELIXIR helpdesk: [contact@bioinfo.no](mailto:contact@bioinfo.no) +national ELIXIR helpdesk: [support@elixir.no](mailto:support@elixir.no) diff --git a/src/content/news/2020/feide-access-to-elixir-norway-data-management-tool-dsw/index.mdx b/src/content/news/2020/feide-access-to-elixir-norway-data-management-tool-dsw/index.mdx index a31ceea..3386fd9 100644 --- a/src/content/news/2020/feide-access-to-elixir-norway-data-management-tool-dsw/index.mdx +++ b/src/content/news/2020/feide-access-to-elixir-norway-data-management-tool-dsw/index.mdx @@ -11,6 +11,6 @@ tags: [data-management, infrastructure] **It is now possible to log on to ELIXIR Norway Data Stewardship Wizard, the data management planning tool for smart generation of DMPs using FEIDE** -We have enabled access to the [ELIXIR Norway Data Stewardship Wizard](https://elixir-no.ds-wizard.org/) using FEIDE login credentials. Users that has not yet registered their FEIDE-ID in the ELIXIR-AAI service need to do so first in order to use this login functionality. A detailed description on how to can be found [here](https://elixir-europe.org/register). Please contact the [Norwegian ELIXIR Helpdesk](mailto:contact@bioinfo.no) if you have any questions. +We have enabled access to the [ELIXIR Norway Data Stewardship Wizard](https://norway.dsw.elixir-europe.org) using FEIDE login credentials. Users that has not yet registered their FEIDE-ID in the ELIXIR-AAI service need to do so first in order to use this login functionality. A detailed description on how to can be found [here](https://elixir-europe.org/register). Please contact the [Norwegian ELIXIR Helpdesk](mailto:support@elixir.no) if you have any questions. UPDATE (2022-03-31): We have streamlined access via FEIDE further, and you will now be directly forwarded to the FEIDE login. diff --git a/src/content/news/2020/usegalaxyno-is-now-in-production/index.mdx b/src/content/news/2020/usegalaxyno-is-now-in-production/index.mdx index 54ae9f7..1331748 100644 --- a/src/content/news/2020/usegalaxyno-is-now-in-production/index.mdx +++ b/src/content/news/2020/usegalaxyno-is-now-in-production/index.mdx @@ -15,4 +15,4 @@ The service is fully operational and can be accessed via FEIDE login credentials Access the Norwegian usegalaxy here: https://usegalaxy.no -If you need support to transfer data from old NeLS Galaxy instances or have any questions/suggestions regarding usegalaxy.no, please contact us at [contact@bioinfo.no](mailto:contact@bioinfo.no) +If you need support to transfer data from old NeLS Galaxy instances or have any questions/suggestions regarding usegalaxy.no, please contact us at [support@elixir.no](mailto:support@elixir.no) diff --git a/src/content/news/2021/elixir-norway-broker-data-to-ena/index.mdx b/src/content/news/2021/elixir-norway-broker-data-to-ena/index.mdx index 5ec332a..1f6ad9e 100644 --- a/src/content/news/2021/elixir-norway-broker-data-to-ena/index.mdx +++ b/src/content/news/2021/elixir-norway-broker-data-to-ena/index.mdx @@ -31,4 +31,4 @@ Institute of Public Health (Folkehelseinstituttet) as a partner in to promote FAIR data management with the life sciences. If you are interested in using this service, please contact the -[ELIXIR Norway Helpdesk](mailto:contact@bioinfo.no). +[ELIXIR Norway Helpdesk](mailto:support@elixir.no). diff --git a/src/content/news/2021/elixir-norway-wiki-for-end-users/index.mdx b/src/content/news/2021/elixir-norway-wiki-for-end-users/index.mdx index 7297f58..b84afc4 100644 --- a/src/content/news/2021/elixir-norway-wiki-for-end-users/index.mdx +++ b/src/content/news/2021/elixir-norway-wiki-for-end-users/index.mdx @@ -18,4 +18,4 @@ for the use of the different parts of our infrastructure. Please have a look [here](https://nels-docs.readthedocs.io/en/latest/). If you have any feedback on the content, or if you wish to see documentation on other parts of what we provide, -please contact the [ELIXIR Norway support desk](mailto:contact@bioinfo.no) +please contact the [ELIXIR Norway support desk](mailto:support@elixir.no) diff --git a/src/content/news/2021/online-course-by-elixir-norway-using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxyno/index.mdx b/src/content/news/2021/online-course-by-elixir-norway-using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxyno/index.mdx index 873ff3d..ac48453 100644 --- a/src/content/news/2021/online-course-by-elixir-norway-using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxyno/index.mdx +++ b/src/content/news/2021/online-course-by-elixir-norway-using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxyno/index.mdx @@ -16,7 +16,7 @@ There are no requirements for programming skills or experience using the command **Time:** We will organise three identical events during spring 2021 - see registration below **Place:** Online **Duration:** 09.00 - 16.00 -**Prerequisites:** FEIDE login credentials or NeLS idp ([apply for NeLS idp](https://nels.bioinfo.no/idp/module.php/core/loginuserpass.php?AuthState=_ce9a4e6d60deb6c2e0b8c13b1cf3b865d45748336a%3Ahttps%3A%2F%2Fnels.bioinfo.no%2Fidp%2Fsaml2%2Fidp%2FSSOService.php%3Fspentityid%3Durn%253Amace%253Afeide.no%253Aservices%253Ano.bioinfo.nels%26cookieTime%3D1614670990)) and a computer you have permissions to install software on +**Prerequisites:** FEIDE login credentials or NeLS idp ([apply for NeLS idp](https://nels.elixir.no/nels/saml/discovery?returnIDParam=idp&entityID=nels.elixir.no)) and a computer you have permissions to install software on Special notes: Google Chrome have some compatibility issues with Galaxy, thus we recommend the following web browsers to be used: Firefox and Safari @@ -28,7 +28,7 @@ The course is limited to 20 people. First come, first served. We aim to offer th ### Consent -By signing on to this training event you give consent that you accept our [terms of use of NeLS](https://nels.bioinfo.no/pages/user-terms.xhtml) and [usegalaxy.no](https://usegalaxy.no/galaxy-terms/). +By signing on to this training event you give consent that you accept our [terms of use of NeLS](https://nels.elixir.no/nels-web/#/tos) and [usegalaxy.no](https://usegalaxy.no/galaxy-terms/). You also give consent that your NeLS user will be added to a shared project folder in NeLS where the exercise data for the course will be stored. Other participants will be able to see that you have access to this shared project. @@ -36,7 +36,7 @@ We will record all lectures with focus on the shared screen of the presenter. Th We wish to provide high quality in our training events, and are dependent on your feedback. We therefore encourage you to complete the survey that we provide with this course. -Feel free to [contact us](mailto:contact@bioinfo.no) if you have any questions regarding the event. +Feel free to [contact us](mailto:support@elixir.no) if you have any questions regarding the event. Kindly regards, diff --git a/src/content/news/2022/fair-data-management-in-life-sciences-14-16-june-2022/index.mdx b/src/content/news/2022/fair-data-management-in-life-sciences-14-16-june-2022/index.mdx index 141dd03..9dd05d2 100644 --- a/src/content/news/2022/fair-data-management-in-life-sciences-14-16-june-2022/index.mdx +++ b/src/content/news/2022/fair-data-management-in-life-sciences-14-16-june-2022/index.mdx @@ -15,7 +15,7 @@ Join the first FAIR Data Management in Life Sciences course, organized by ELIXIR ### About -The course aims to cover topics covering the whole data life cycle (as shown in the [Research Data Management kit by ELIXIR Europe](https://rdmkit.elixir-europe.org/)) with a specific focus on the implementation of the [FAIR data principles](https://www.go-fair.org/fair-principles/). The goal is to teach the key concepts on how to make life sciences data Findable, Accessible, Interoperable, and Reusable for your research management. For queries, check out [Frequently Asked Questions](https://github.com/elixir-oslo/fair-dm-2022-course/blob/main/faqs.md) and/or you can send mail to [contact@bioinfo.no](mailto:contact@bioinfo.no). +The course aims to cover topics covering the whole data life cycle (as shown in the [Research Data Management kit by ELIXIR Europe](https://rdmkit.elixir-europe.org/)) with a specific focus on the implementation of the [FAIR data principles](https://www.go-fair.org/fair-principles/). The goal is to teach the key concepts on how to make life sciences data Findable, Accessible, Interoperable, and Reusable for your research management. For queries, check out [Frequently Asked Questions](https://github.com/elixir-oslo/fair-dm-2022-course/blob/main/faqs.md) and/or you can send mail to [support@elixir.no](mailto:support@elixir.no). ### Learning Objectives @@ -65,4 +65,4 @@ The course is aimed at current and future life scientists in Norway. The target [ELIXIR-Norway Data Stewardship Wizard](https://elixir-no.ds-wizard.org/) [End-User Course on FAIR Data Management for Life Sciences Research in Norway](https://zenodo.org/record/6104400#.YmFyjZNBxqs) - Deliverable report, available on Zenodo -For queries, check out Frequently Asked Questions and/or you can send mail to the organisers at [contact@bioinfo.no](mailto:contact@bioinfo.no?subject=[BioMedData]%20FAIR user Course) +For queries, check out Frequently Asked Questions and/or you can send mail to the organisers at [support@elixir.no](mailto:support@elixir.no?subject=[BioMedData]%20FAIR user Course) diff --git a/src/data/organizations.ts b/src/data/organizations.ts index 1991a87..67642b5 100644 --- a/src/data/organizations.ts +++ b/src/data/organizations.ts @@ -44,7 +44,7 @@ export const organizations: Record = { { reason: 'Contact ELIXIR Norway', email: 'contact@elixir.no' }, ], links: [ - { text: 'Norwegian e-infrastructure for Life Science (NeLS)', url: 'https://nels.bioinfo.no/' }, + { text: 'Norwegian e-infrastructure for Life Science (NeLS)', url: 'https://nels.elixir.no' }, { text: 'Computational Biology Unit (CBU) UiB', url: 'https://cbu.w.uib.no/' }, ], callout: 'For a bioinformatics support request regarding a project you are working on, please use the helpdesk e-mail address: contact@elixir.no. That will reach a large group of bioinformaticians that will try to answer your request by e-mail, and if needed a local meeting can be organised.', diff --git a/src/pages/training/index.astro b/src/pages/training/index.astro index c90c694..fb777fa 100644 --- a/src/pages/training/index.astro +++ b/src/pages/training/index.astro @@ -55,7 +55,7 @@ const BASE = import.meta.env.BASE_URL.replace(/\/$/, '');

Tool-Specific Courses

- Hands-on training for NeLS, UseGalaxy, Data Stewardship Wizard, FEGA-Norway, and other tools in the ELIXIR ecosystem. + Hands-on training for NeLS, UseGalaxy, Data Stewardship Wizard, FEGA-Norway, and other tools in the ELIXIR ecosystem.