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shinyFunBioDiv

Shiny app for exploring FunBioDiv datasets. You can run the shinyApp locally, or use it online.

Run the shiny-app locally

First, you need to install this R-package with the following step:

## Install < remotes > package (if not already installed) ----
if (!requireNamespace(c("remotes"), quietly = TRUE)) {
  install.packages(c("remotes"))
}

## Install < shinyFunBioDiv > from GitHub ----
remotes::install_github("FRBCesab/shinyFunBioDiv")

Then you can run the Shiny app locally with the function runShiny():

## load < shinyFunBioDiv> package
library(shinyFunBioDiv)

# run the Shiny app locally
runShiny()

Update metadata and export on shinyapps.io

To follow this procedure, you need to clone this repository in Github. Then follow the three steps below.

1. Update the metadata

devtools::load_all()
source("analysis/01_prepare_data.R")
source("analysis/02_contingency.R")

2. Test the shiny app

# run the Shiny app locally
runShiny()

3. Deploy the shiny app to shinyapps.io

# deploy the shinyapp to online server
rsconnect::deployApp(
    appDir = "app",
    appFiles = rsconnect::listDeploymentFiles("app"),
    appName = "shinyFunBioDiv",
    appTitle = "FunBioDiv data explorer"
)

Create the metadata Dashboard

quarto::quarto_render("analysis/04_explore.qmd")
file.rename("analysis/04_explore.html", "docs/metadata_Funbiodiv.html")
quarto::quarto_render("analysis/05_overview.qmd")
file.rename("analysis/05_overview.html", "docs/overview_Funbiodiv.html")