Skip to content

Error:Using Seurat V5 transfer .h5 file to .rds file #2

Description

@c-Zzzzz

Hi, I have an issue trying to transform my h5 data into Seurat.
It work with Seurat=4.4.0, but no work in >5.0.0

data <- read_h5(file,
assay.name = 'RNA',
target.object = 'seurat')
<simpleError in validObject(.Object): invalid class “DimReduc” object: rownames must be present in 'cell.embeddings'>

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions