merging

Author: madhavajay

rust/Cargo.lock

@@ -9,7 +9,7 @@ crate-type = ["rlib"]
 [dependencies]
 bioscript-core = { path = "../bioscript-core" }
 flate2 = "1.1.9"
-noodles = { version = "0.109.0", features = ["bgzf", "core", "cram", "csi", "fasta", "sam", "tabix", "vcf"] }
+noodles = { version = "0.109.0", features = ["bam", "bgzf", "core", "cram", "csi", "fasta", "sam", "tabix", "vcf"] }
 zip = { version = "2.2.0", default-features = false, features = ["deflate"] }
 
 [lints.clippy]

rust/bioscript-formats/Cargo.toml

@@ -13,8 +13,12 @@ mod cram_stream;
 mod readers;
 
 pub use readers::{
-    build_cram_indexed_reader_from_reader, build_reference_repository_from_readers,
-    parse_crai_bytes, parse_fai_bytes, parse_tbi_bytes,
+    build_bam_indexed_reader_from_reader, build_cram_indexed_reader_from_reader,
+    build_reference_repository_from_readers,
+    generate_bam_bai_bytes, generate_bam_bai_reader, generate_cram_crai_bytes,
+    generate_cram_crai_reader, generate_fasta_fai_bytes, generate_fasta_fai_reader,
+    generate_vcf_tbi_bytes,
+    parse_bai_bytes, parse_crai_bytes, parse_fai_bytes, parse_tbi_bytes,
 };
 
 pub(crate) use cram_stream::for_each_raw_cram_record_with_reader_inner;