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aelkhalkiaelkhalki
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Add database structure
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‎src/main/resources/pl1.sql‎

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--
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-- PostgreSQL database dump
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--
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-- Dumped from database version 9.5.2
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-- Dumped by pg_dump version 9.5.2
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SET statement_timeout = 0;
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SET lock_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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SET row_security = off;
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--
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-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner:
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--
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CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;
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--
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-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner:
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--
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COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';
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SET search_path = public, pg_catalog;
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SET default_tablespace = '';
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SET default_with_oids = false;
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--
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-- Name: genomeslinks; Type: TABLE; Schema: public; Owner: postgres
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--
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CREATE TABLE genomeslinks (
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from_id integer NOT NULL,
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to_id integer NOT NULL,
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genome character varying(20) NOT NULL
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);
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ALTER TABLE genomeslinks OWNER TO postgres;
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--
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-- Name: links; Type: TABLE; Schema: public; Owner: postgres
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--
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CREATE TABLE links (
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from_id integer NOT NULL,
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to_id integer NOT NULL,
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threshold integer NOT NULL,
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id integer NOT NULL
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);
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ALTER TABLE links OWNER TO postgres;
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--
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-- Name: links_id_seq; Type: SEQUENCE; Schema: public; Owner: postgres
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--
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CREATE SEQUENCE links_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
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ALTER TABLE links_id_seq OWNER TO postgres;
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--
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-- Name: links_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: postgres
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--
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ALTER SEQUENCE links_id_seq OWNED BY links.id;
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--
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-- Name: segments; Type: TABLE; Schema: public; Owner: postgres
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--
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CREATE TABLE segments (
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id integer NOT NULL,
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data text,
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x integer NOT NULL,
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y integer NOT NULL,
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isbubble boolean NOT NULL
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);
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ALTER TABLE segments OWNER TO postgres;
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--
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-- Name: specimen; Type: TABLE; Schema: public; Owner: postgres
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--
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CREATE TABLE specimen (
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specimen_id text NOT NULL,
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age character varying(7) NOT NULL,
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sex character varying(7) NOT NULL,
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hiv_status character varying(8) NOT NULL,
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cohort character varying(6) NOT NULL,
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date_of_collection character varying(10) NOT NULL,
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study_geographic_district character varying(13) NOT NULL,
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specimen_type character varying(13) NOT NULL,
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microscopy_smear_status character varying(8) NOT NULL,
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dna_isolation_single_colony_or_nonsingle_colony character varying(17) NOT NULL,
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phenotypic_dst_pattern character varying(11) NOT NULL,
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capreomycin_10ugml character varying(1) NOT NULL,
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ethambutol_75ugml character varying(1) NOT NULL,
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ethionamide_10ugml character varying(1) NOT NULL,
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isoniazid_02ugml_or_1ugml character varying(1) NOT NULL,
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kanamycin_6ugml character varying(1) NOT NULL,
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pyrazinamide_nicotinamide_5000ugml_or_pzamgit character varying(1) NOT NULL,
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ofloxacin_2ugml character varying(1) NOT NULL,
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rifampin_1ugml character varying(1) NOT NULL,
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streptomycin_2ugml character varying(1) NOT NULL,
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digital_spoligotype character varying(18) NOT NULL,
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lineage character varying(7) NOT NULL,
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genotypic_dst_pattern character varying(22) NOT NULL,
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tugela_ferry_vs_nontugela_ferry_xdr character varying(20) NOT NULL
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);
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ALTER TABLE specimen OWNER TO postgres;
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--
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-- Name: id; Type: DEFAULT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY links ALTER COLUMN id SET DEFAULT nextval('links_id_seq'::regclass);
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--
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-- Name: genomeslinks_pkey; Type: CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY genomeslinks
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ADD CONSTRAINT genomeslinks_pkey PRIMARY KEY (from_id, to_id, genome);
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--
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-- Name: links_pkey; Type: CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY links
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ADD CONSTRAINT links_pkey PRIMARY KEY (id);
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--
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-- Name: mytable_pkey; Type: CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY segments
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ADD CONSTRAINT mytable_pkey PRIMARY KEY (id);
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--
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-- Name: specimen_pkey; Type: CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY specimen
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ADD CONSTRAINT specimen_pkey PRIMARY KEY (specimen_id);
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--
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-- Name: unique_link; Type: CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY links
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ADD CONSTRAINT unique_link UNIQUE (from_id, to_id, threshold);
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--
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-- Name: links_from_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY links
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ADD CONSTRAINT links_from_id_fkey FOREIGN KEY (from_id) REFERENCES segments(id);
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--
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-- Name: links_to_id_fkey; Type: FK CONSTRAINT; Schema: public; Owner: postgres
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--
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ALTER TABLE ONLY links
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ADD CONSTRAINT links_to_id_fkey FOREIGN KEY (to_id) REFERENCES segments(id);
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--
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-- Name: public; Type: ACL; Schema: -; Owner: postgres
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--
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REVOKE ALL ON SCHEMA public FROM PUBLIC;
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REVOKE ALL ON SCHEMA public FROM postgres;
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GRANT ALL ON SCHEMA public TO postgres;
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GRANT ALL ON SCHEMA public TO PUBLIC;
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--
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-- Name: genomeslinks; Type: ACL; Schema: public; Owner: postgres
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--
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REVOKE ALL ON TABLE genomeslinks FROM PUBLIC;
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REVOKE ALL ON TABLE genomeslinks FROM postgres;
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GRANT ALL ON TABLE genomeslinks TO postgres;
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GRANT ALL ON TABLE genomeslinks TO pl;
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--
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-- Name: links; Type: ACL; Schema: public; Owner: postgres
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--
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REVOKE ALL ON TABLE links FROM PUBLIC;
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REVOKE ALL ON TABLE links FROM postgres;
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GRANT ALL ON TABLE links TO postgres;
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GRANT ALL ON TABLE links TO pl;
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--
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-- Name: links_id_seq; Type: ACL; Schema: public; Owner: postgres
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--
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REVOKE ALL ON SEQUENCE links_id_seq FROM PUBLIC;
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REVOKE ALL ON SEQUENCE links_id_seq FROM postgres;
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GRANT ALL ON SEQUENCE links_id_seq TO postgres;
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GRANT ALL ON SEQUENCE links_id_seq TO pl;
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--
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-- Name: segments; Type: ACL; Schema: public; Owner: postgres
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--
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REVOKE ALL ON TABLE segments FROM PUBLIC;
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REVOKE ALL ON TABLE segments FROM postgres;
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GRANT ALL ON TABLE segments TO postgres;
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GRANT ALL ON TABLE segments TO pl;
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--
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-- Name: specimen; Type: ACL; Schema: public; Owner: postgres
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--
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REVOKE ALL ON TABLE specimen FROM PUBLIC;
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REVOKE ALL ON TABLE specimen FROM postgres;
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GRANT ALL ON TABLE specimen TO postgres;
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GRANT ALL ON TABLE specimen TO pl;
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--
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-- PostgreSQL database dump complete
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--
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