bio-node-webserver/test.yml at master · bromberglab/bio-node-webserver · GitHub

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apiVersion: batch/v1
kind: Job
metadata:
  name: will-be-overridden
spec:
  backoffLimit: 1
  template:
    spec:
      containers:
      - args: []
        command:
        - /bio-node/entry.sh
        env:
        - name: PATH
          value: /usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
        - name: LANG
          value: C.UTF-8
        - name: GPG_KEY
          value: 0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D
        - name: PYTHON_VERSION
          value: 3.7.3
        - name: PYTHON_PIP_VERSION
          value: 19.0.3
        - name: INPUT_PATH
          value: /input
        - name: OUTPUT_PATH
          value: /output
        - name: PREV_ENTRYPOINT
          value: python -m mifaser.cli
        - name: ADD_PARAMETERS
          value: ''
        - name: INPUTS_META
          value: fasta_file|fasta_gz|fastq_file|fastq_gz|url|sra_id,-f,required,filename,;fasta_file|fasta_gz|fastq_file|fastq_gz|url|sra_id,-l,optional,filename,
        - name: OUTPUTS_META
          value: mifaser_output,-o,,
        image: gcr.io/poised-cortex-254814/mifaser_dev
        name: job
        volumeMounts:
        - mountPath: /input
          name: vol
          readOnly: true
          subPath: data/fasta_file/512bd64c-32bc-4002-9eb1-e4923cef1d25
        - mountPath: /output
          name: vol
          subPath: data/job_outputs/0658ae3a-666d-40c1-b887-f8997a5b4f81
      restartPolicy: Never
      volumes:
      - name: vol
        persistentVolumeClaim:
          claimName: cephfs-pvc
          readOnly: false