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Having immediately available QC helps users iterate and make sure they got the right and stable fitting configuration without having to spin up additional analysis software.
Here's two to do:
This is copied from: Feature request - log-likelihood output file FangfeiLi05/PyFitSeq#10
It is useful to see the trajectory of changes in the log-likelihood to analyze the kinetics of the optimization.
Presently, I think that's just output to stdout.
Let's add an argument, if set, will write LL to a file (set by the argument of course!!!)
This is copied from: Feature request - QC histogram of fitnesses FangfeiLi05/PyFitSeq#9
It's often diagnostic to see how the fitnesses are distributed. Sometimes they can look funny,
indicating parameters are converging strangely. A diagnostic histogram of fitnesses would be a handy output!
Having immediately available QC helps users iterate and make sure they got the right and stable fitting configuration without having to spin up additional analysis software.
Here's two to do:
It is useful to see the trajectory of changes in the log-likelihood to analyze the kinetics of the optimization.
Presently, I think that's just output to stdout.
Let's add an argument, if set, will write LL to a file (set by the argument of course!!!)
It's often diagnostic to see how the fitnesses are distributed. Sometimes they can look funny,
indicating parameters are converging strangely. A diagnostic histogram of fitnesses would be a handy output!