ase.md

ASE = allele specific expression, allelic imbalance

• https://stephanecastel.wordpress.com/2017/02/15/how-to-generate-ase-data-with-phaser/

Installation of Phaser:

git clone https://github.com/secastel/phaser.git
module load gcc/6.2.0  
module load python/2.7.12
cython/0.25.1
pip install intervaltree --user
cd phaser/phaser
python setup.py build_ext --inplace

ASE QC:

• https://github.com/gimelbrantlab/Qllelic