Update README.md

Author: dewyman

README.md

@@ -41,7 +41,7 @@ TranscriptClean is run from the command line as follows. Please note that releas
 | --maxLenIndel       | n/a       | Maximum size indel to correct. Default = 5 bp.
 | --maxSJOffset       | n/a       | Maximum distance from annotated splice junction to correct. Default = 5 bp.  
 | --primaryOnly       | n/a       | If this option is set, TranscriptClean will only output primary mappings of transcripts (ie it will filter out unmapped and multimapped lines from the SAM input.)
-| --canonOnly       | n/a       | If this option is set, TranscriptClean will only output transcripts that are either canonical or that contain annotated noncanonical junctions to the clean SAM file at the end of the run.
+| --canonOnly       | n/a       | If this option is set, TranscriptClean will only output transcripts that are either canonical or that contain annotated noncanonical junctions to the clean SAM and Fasta files at the end of the run.
 
 ### Other options that may help tune performance
 | Option              | Shortcut  | Description