Skip to content

KeyError: 'Name' #196

@jingydz

Description

@jingydz

time samplot plot
-n 1A 2A 3A
-b /xxx/1A.Mdup.realigned.recal.bam
/xxx/2A.Mdup.realigned.recal.bam
/xxx/3A.Mdup.realigned.recal.bam
-o chrx_start_end.png
-c chrx
-s start
-e end
-t DUP
-w 47
-T /xxx/genome/hg38/Homo_sapiens.GRCh38.111.sort.gff3.gz

$ bash samplot.test.sh
Traceback (most recent call last):
File "/Parastor300s_G30S/zhangjj/software/miniconda3/bin/samplot", line 10, in
sys.exit(main())
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/main.py", line 31, in main
args.func(parser, args, extra_args)
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py", line 3655, in plot
plot_transcript(
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py", line 3419, in plot_transcript
transcript_plan = get_transcript_plan(ranges, transcript_file)
File "/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py", line 3331, in get_transcript_plan
genes[info["Name"]] = [
KeyError: 'Name'

real 0m2.285s
user 0m1.503s
sys 0m1.398s

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions