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First analysis- 30mer pLDDT - #3

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Commits on Jun 16, 2025

test command
Spencer Romero
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2676033
30mer basic data anaylse
Spencer Romero
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9ea8050

Commits on Jun 17, 2025

all pLDDT statistics for epitopes and non-epitopes as well as pae values
Spencer Romero
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d4c6f69

Commits on Jun 18, 2025

Merge branch 'main' into spencer-changes
ljwoods2
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d6d9a31
The ROC graphs and code
Spencer Romero
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d2936e9

Commits on Jun 19, 2025

Merge branch 'main' into spencer-changes
Spencer Romero
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2c7506a
New Data Graphs
Spencer Romero
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a401670
check the mdanalysis code to make sure it is right
Spencer Romero
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c7d9b8c

Commits on Jun 24, 2025

The focal protein statistical data and graphs
Spencer Romero
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74d993c

Commits on Jun 25, 2025

Atomic weight data and cleanup
Spencer Romero
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44926a3
Shows the AUC scores for each focal protein based on the mean, max, and min of the atomic weights of the 9-mers
Spencer Romero
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RSA script
Spencer Romero
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Merge branch 'main' into spencer-changes
ljwoods2
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first stab at RSA calc NF script
ljwoods2
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add mdakit_sasa as dep
ljwoods2
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add shebang
ljwoods2
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00bddba

Commits on Jun 27, 2025

RSA values and Bepi graphs
Spencer Romero
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gitignore
Spencer Romero
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Merge branch 'main' into spencer-changes
Spencer Romero
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Merge branch 'main' into spencer-changes
Spencer Romero
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b0c60ab
data on new HV1 set and IN1 set
Spencer Romero
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aa31cb1

Commits on Jun 30, 2025

convert paths to relative
ljwoods2
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convert in_data to py markdown
ljwoods2
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2252786

Commits on Jul 1, 2025

updated hv_class and in_class notebook
Spencer Romero
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resolving merge conflicts
Spencer Romero
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a056699
sh commit
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merge
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f8e3730

Commits on Jul 8, 2025

structure results
Spencer Romero
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