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Pull requests: Clinical-Genomics/oncorefiner

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Pull requests list

add process amber baf for gens
#120 opened Jun 2, 2026 by mathiasbio Contributor • Draft
2
add gens
#119 opened Jun 2, 2026 by mathiasbio Contributor • Draft
2
feat: Add sv params
#118 opened Jun 2, 2026 by kristinebilgrav Contributor • Draft
2
feat: Add stub tests
#117 opened Jun 1, 2026 by beatrizsavinhas Contributor Loading…
16
feat: Annotate sv linx
#115 opened May 29, 2026 by kristinebilgrav Contributor • Draft
2
feat: add sv annotation scripts
#114 opened May 29, 2026 by kristinebilgrav Contributor • Draft
7
add gens cobalt amber params
#112 opened May 28, 2026 by mathiasbio Contributor • Draft
2
Subworkflow specific configs
#105 opened May 20, 2026 by kristinebilgrav Contributor • Draft
5
feat: Add parameters for cnv report
#104 opened May 19, 2026 by fevac Collaborator Loading…
20
feat: Add SNV variant scoring
#103 opened May 13, 2026 by beatrizsavinhas Contributor Loading…
47
fix: Update publishing strategy for PROCESS_SVS
#93 opened May 7, 2026 by beatrizsavinhas Contributor • Draft
2
feat: add cnv report
#91 opened May 5, 2026 by fevac Collaborator • Draft
5
feat: Add markdown script for CNV report generation
#89 opened May 5, 2026 by fevac Collaborator Loading…
14
docs: Update contributing guidelines in CONTRIBUTING.md
#88 opened May 4, 2026 by beatrizsavinhas Contributor • Draft
2
fix: vep args keep unannotated
#84 opened Apr 27, 2026 by mathiasbio Contributor • Draft
1
2
refactor: update publishing strategy for process_snvs subworkflow
#81 opened Apr 27, 2026 by kristinebilgrav Contributor Loading…
16
feat: made all steps optional
#47 opened Mar 11, 2026 by fevac Collaborator • Draft
3
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