Nucleic-Acid Structure Prediction in CASP16

Nucleic-Acid Structure Prediction Assessment by Structure Providers

Scripts, data, and plotting code to support some of the anlaysis of CASP16 structure prediction by structure providers can be found in NA_structure_providers_assessment.

This repository supports the following manuscript:

Kretsch, R. C.; Albrecht, R.; Andersen, E. S.; Chen, H.-A.; Chiu, W.; Das, R.; Gezelle, J. G.; Hartmann, M. D.; Höbartner, C.; Hu, Y.; Jadhav, S.; Johnson, P. E.; Jones, C. P.; Koirala, D.; Kristoffersen, E. L.; Largy, E.; Lewicka, A.; Mackereth, C. D.; Marcia, M.; Nigro, M.; Ojha, M.; Piccirilli, J. A.; Rice, P. A.; Shin, H.; Steckelberg, A.-L.; Su, Z.; Srivastava, Y.; Wang, L.; Wu, Y.; Xie, J.; Zwergius, N. H.; Moult, J.; Kryshtafovych, A. Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers. bioRxiv, 2025, 2025.04.15.649049. https://doi.org/10.1101/2025.04.15.649049.

Prediction of Water and Ion Occupancy, R1260, Assessment

Scripts, data, and plotting code to support the evaluation of water and ion occupancy prediction in CASP16 can be found in R1260_assessment.

Citation coming soon.

Nucleic-Acid Structure Prediction Evaluation

Scripts, data, and plotting code to support the global evaluation of nucleic-acid structure prediction in CASP16 can be found in NA_CASP_assessment.

This repository supports the following manuscript:

Kretsch, R. C.; Hummer, A. M.; He, S.; Yuan, R.; Zhang, J.; Karagianes, T.; Cong, Q.; Kryshtafovych, A.; Das, R. Assessment of Nucleic Acid Structure Prediction in CASP16. bioRxiv, 2025, 2025.05.06.652459. https://doi.org/10.1101/2025.05.06.652459.