build(deps): Bump fast-xml-builder from 1.1.5 to 1.2.0#4
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build(deps): Bump fast-xml-builder from 1.1.5 to 1.2.0#4dependabot[bot] wants to merge 1 commit into
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Bumps [fast-xml-builder](https://github.com/NaturalIntelligence/fast-xml-builder) from 1.1.5 to 1.2.0. - [Changelog](https://github.com/NaturalIntelligence/fast-xml-builder/blob/main/CHANGELOG.md) - [Commits](NaturalIntelligence/fast-xml-builder@v1.1.5...v1.2.0) --- updated-dependencies: - dependency-name: fast-xml-builder dependency-version: 1.2.0 dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com>
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Add PDF_ANALYSIS_SUPPRESS_SUGGESTIONS so suggestions can be ignored by what they change, via a `<action>[:<column>[:<state>]]` grammar (e.g. `update:source:filled`). `state` (empty|filled) targets the user's current cell value so updates can be restricted to empty and/or populated fields. Default `update:resourceName,update:source:filled` stops name-change suggestions on existing KRT rows (issues #4/#6) and never overwrites a SOURCE the user already filled, while still filling empty ones. `none` opts out entirely. Documents the grammar in .env.example and environment-variables.md. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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… finds Robustness: the comparison and generation parsers now repair the common unescaped-backslash malformation (sanitizeJsonEscapes) and retry empty/broken LM responses, returning best-effort after the last attempt; the comparison completeness prompt + an 'unreviewed' flag surface any generated ref the LM omitted so a partial response no longer drops suggestions silently. Tiering (issue #2): add suggestions carry a `tier` (confident / needs_verification) + `tierReason` — an add with no identifier is surfaced but flagged for the curator to verify rather than suppressed or presented as high-confidence. The KRT editor shows an amber "Verify" badge; the suggestions audit view renders the 'Unreviewed' decision. Datasets (issues #2/#4): principle 6 in the comparison prompt now surfaces the authors' own depositable data even when the identifier is missing, and skips datasets that are only cited for comparison rather than used/generated. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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…dataset detection Seed retention (issue #1): buildGeneratedKrt now reconciles the Generated KRT against the author KRT — any author item the LM consolidation dropped is carried back, tagged `carriedFromAuthorKrt`, so an author-provided resource can never be silently lost (observed: the datasets consolidation dropping ~1 in 5 author dataset seeds it mistook for assay readouts, even ones with a Zenodo DOI). Antibodies (issue #3): the materials prompt now captures every antibody from cues (RRID:AB_, anti-<target>, host, clone, dilution, vendor+catalog) instead of only enriching seeds — identifier-less ones ride the new needs_verification tier. Confirmed +0.09 antibody recall across a 3-run eval. Datasets (issues #2/#4): the consolidation gate allows the authors' own depositable data with a missing identifier, and excludes datasets cited only for comparison. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Jul 22, 2026
…e, errors gate - #2: protocols.io protocols now require a DOI/URL identifier (error) — plain text no longer passes silently. Applied in both the DB validateRow path and the stateless validateRowValues path. - #4: clearer 'Source is required' guidance distinguishing the repository/vendor name (Source) from the DOI/URL (Identifier). - #16: row-order toggle in the editor — 'By resource type' (default) vs 'As submitted' (original input order); an explicit column sort still wins. - #11: RESOURCE TYPE errors always block Continue; other errors can be passed via an explicit 'Continue anyway' acknowledge modal. Warnings never block. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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Bumps fast-xml-builder from 1.1.5 to 1.2.0.
Changelog
Sourced from fast-xml-builder's changelog.
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a9a905bfor release42680e8support name sanitization8b00185release info8a08f17allow indentation to be empty string7fc5decupdate docsc241b6aimprove documentation15d5668update for release9877485fix: skip text property for PI tags311a221fix #5 typing import issuese8fc5b1update for releastYou can trigger a rebase of this PR by commenting
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