Mesh smoothing tm#143

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jrper wants to merge 45 commits intomainfrom

mesh_smoothing_tm

Commits on Jul 4, 2016

Framework to drive Laplacian smoothing routines from Fluidity.
jrper
committed

Commits on Jul 8, 2016

First iteration of PETSC Laplacian Smoother [Not 100% Working yet].
Tim McManus
committed
Fixing indexing.
jrper
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Commits on Jul 9, 2016

Removing unused variables, and adding kill commands for vec,mat,ksp
Tim McManus
committed

Commits on Jul 12, 2016

Running the code in parallel from Fluidity.
jrper
committed

Commits on Jul 18, 2016

BUGFIX: uninitialised counter and deal with parallel partioning with no genuine boundary.
James R Percival
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Preparing for 3D meshes + inclduing commit 317d6e0 bugfix
Tim McManus
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Calculating inverse of 4x4 matrix [needs to be tested] and fixing type on line 150.
Tim McManus
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Minor adjustment to 4x4 inverse calculator.
Tim McManus
committed

Commits on Jul 19, 2016

Adding 3D K_{e}
Tim McManus
committed

Commits on Jul 25, 2016

2D and 3D Laplacian Smoothing (tested in serial and parallel).
Tim McManus
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Merge branch 'master' of https://github.com/FluidityProject/fluidity into mesh_smoothing_tm
Tim McManus
committed

Commits on Jul 26, 2016

Added 1D Lap. Smooth.
Tim McManus
committed

Commits on Jul 28, 2016

Update laplacian smoothing to work with adaptivity.
jrper
committed

Commits on Sep 9, 2016

Preparing for lineal spring implementation.
Tim McManus
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Aux file modifications for lineal spring.
Tim McManus
committed

Commits on Oct 5, 2016

Bug fix: Don't move mesh when initialising grid velocity.
jrper
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Commits on Oct 6, 2016

Lineal Spring work in progress.
Tim McManus
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Merge branch 'mesh_smoothing_tm' of https://github.com/FluidityProject/fluidity into mesh_smoothing_tm
Tim McManus
committed

Commits on Oct 18, 2016

Parallel implementation of lineal spring analogy
Tim McManus
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Removing unused variables and accounting for configurations that do not use C99 mode
Tim McManus
committed

Commits on Oct 20, 2016

Parallel 2D Lineal Torsional Spring Analogy
Tim McManus
committed

Commits on Oct 21, 2016

Fixed segfault not caught on laptop build.
Tim McManus
committed

Commits on Oct 27, 2016

Add linear elastic code and clean up mesh movement bcs.
jrper
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Commits on Oct 31, 2016

Node neighbours from Fluidity cache
jrper
committed

Commits on Nov 2, 2016

Improve linear elastic mesh movement test.Add check for triangle
jrper
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Commits on Nov 3, 2016

3D parallel lineal spring analogy with flml example.
Tim McManus
committed

Commits on Nov 21, 2016

Centroid-based Relaxation Framework
Tim McManus
committed

Commits on Dec 3, 2016

Ser. and Par. tests for Lin, Lap and Lap_Tor Smoothers. Lin_tor_smoother.c also updated
Tim McManus
committed

Commits on Dec 6, 2016

Manual changes to explain the mesh movement method.
jrper
committed

Commits on Dec 7, 2016

Remove accidental Makefile from git and reorder use statements.
jrper
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Commits on Dec 9, 2016

Streamlined lineal/lineal torsional method. Cleaned tests as well.
Tim McManus
committed

Commits on Dec 20, 2016

Adding Laplacian Smoothing and Lineal/Torsional Spring documentation to manual.
Tim McManus
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Commits on Jan 20, 2017

Use Fluidity's cached matrix sparsities. Cleans up the coupled scaling analysis.
jrper
committed

Commits on Jan 23, 2017

Commits on Jan 24, 2017

Fixing parallel for meshh smoothing. Now lineal and lineal-torsional both use fluidity mesh numbering for everything.
jrper
committed

Commits on Jan 26, 2017

Squashme Adding missing file so this compiles, plus boundary condition tweaks for lineal and lineal torsional mesh smoothing.
jrper
committed

Commits on Feb 3, 2017

Fixing a memory leak in lineal_torsional. This might be my fault.
jrper
committed

Commits on Feb 15, 2017

Added C PETSc solver routines with fuller solver options. Also cleaned up the lineal and laplacian mesh movement routines.
jrper
committed

Commits on May 10, 2017

Bugfix: Fixing lineal smoothing numbering in 3D, as discovered by @jmn114.
jrper
committed