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add some better error checking Docker #37: Commit 40c015d pushed by cjfields
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add some better error checking CI #37: Commit 40c015d pushed by cjfields
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feat: support - as stdin for tagged-JSON inputs Docker #36: Commit 97766e8 pushed by cjfields
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feat: support - as stdin for tagged-JSON inputs CI #36: Commit 97766e8 pushed by cjfields
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feat: add tax-to-tsv subcommand Docker #35: Commit fd64070 pushed by cjfields
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feat: add tax-to-tsv subcommand CI #35: Commit fd64070 pushed by cjfields
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feat(assign-species): take assign-taxonomy JSON, fill Species column Docker #34: Commit 428a2ce pushed by cjfields
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feat(assign-species): take assign-taxonomy JSON, fill Species column CI #34: Commit 428a2ce pushed by cjfields
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feat(derep): emit sort_order tag to skip defensive sort on JSON reuse Docker #33: Commit 382b8e0 pushed by cjfields
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feat(derep): emit sort_order tag to skip defensive sort on JSON reuse CI #33: Commit 382b8e0 pushed by cjfields
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R and Python extern is now available, just needs testing CI #32: Commit b9980d2 pushed by cjfields
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R and Python extern is now available, just needs testing Docker #32: Commit b9980d2 pushed by cjfields
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Cleanup GHCR Images Cleanup GHCR Images #2: Manually run by cjfields
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feat(dada): accept derep/sample JSON as input for dada and dada-pooled CI #31: Commit 5a78467 pushed by cjfields
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feat(dada): accept derep/sample JSON as input for dada and dada-pooled Docker #31: Commit 5a78467 pushed by cjfields
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feat: filter seq-table-to-{fasta,tsv} by prevalence / min-abundance CI #30: Commit e5feffb pushed by cjfields
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feat: filter seq-table-to-{fasta,tsv} by prevalence / min-abundance Docker #30: Commit e5feffb pushed by cjfields
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docs: add AGENTS.md with build, conventions, and architecture guidance Docker #29: Commit 6864d79 pushed by cjfields
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docs: add AGENTS.md with build, conventions, and architecture guidance CI #29: Commit 6864d79 pushed by cjfields
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fix(test): replace timestamp-based TempDir uniqueness with atomic cou… CI #28: Commit 08e2bf7 pushed by cjfields
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fix(test): replace timestamp-based TempDir uniqueness with atomic cou… Docker #28: Commit 08e2bf7 pushed by cjfields
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fix(docker): inject DADA2_RS_VERSION_FULL into image builds Docker #27: Commit 72b4b15 pushed by cjfields
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fix(docker): inject DADA2_RS_VERSION_FULL into image builds CI #27: Commit 72b4b15 pushed by cjfields
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Cleanup GHCR Images Cleanup GHCR Images #1: Manually run by cjfields
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Add a test Docker cleanup that is manually triggered Docker #26: Commit 3ff702e pushed by cjfields
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