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Bug: Colab notebook broken by NumPy 2.0 release and syntax errors in the "IMPORTANT" patch cell

Status: Open.

#23 In HWaymentSteele/AF_Cluster;

· ywchanna2001 opened on Apr 5, 2026

Request for Code to Reproduce Figure 3.e

Status: Open.

#20 In HWaymentSteele/AF_Cluster;

· KuKuKuKuKuKurisu opened on Jan 15, 2025

Dimeric protein complex not remaining in AF-Cluster a3ms

Status: Open.

#19 In HWaymentSteele/AF_Cluster;

· jimfeng9705 opened on Nov 22, 2024

Running clustered msa on Local ColabFold

Status: Open.

#18 In HWaymentSteele/AF_Cluster;

· jimfeng9705 opened on Sep 10, 2024

MPO

Status: Open.

#17 In HWaymentSteele/AF_Cluster;

· HaniRad opened on May 5, 2024

Issues in the DataFrame

Status: Open.

#16 In HWaymentSteele/AF_Cluster;

· kroy3 opened on Apr 1, 2024

#ModuleNotFoundError in runAF2.py

Status: Open.

#13 In HWaymentSteele/AF_Cluster;

· palvinaveen opened on Jan 3, 2024

import error in AF_cluster colab notebook

Status: Open.

#12 In HWaymentSteele/AF_Cluster;

· palvinaveen opened on Jan 3, 2024

about the af_cluster input

Status: Open.

#11 In HWaymentSteele/AF_Cluster;

· chasezhu opened on Dec 22, 2023

Problems when using clustered msa in alphafold

Status: Open.

#10 In HWaymentSteele/AF_Cluster;

· mariagviegas opened on Aug 10, 2023

--min_eps and --eps_step flags not recognized

Status: Open.

#9 In HWaymentSteele/AF_Cluster;

· mariagviegas opened on Aug 9, 2023

TypeError: '>=' not supported between instances of 'numpy.ndarray' and 'str' for min_samples

Status: Open.

#8 In HWaymentSteele/AF_Cluster;

· Rmadeye opened on Jul 6, 2023