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IndexError: list index out of range

Status: Open.

#117 In JiekaiLab/scTE;

· trietkiet opened on Apr 25, 2026

scTE: error: argument -CB: invalid choice: 'CB:Z' (choose from CR, CB, False)

Status: Open.

#116 In JiekaiLab/scTE;

· katsikora opened on Mar 20, 2026

Smart-seq2

Status: Open.

#115 In JiekaiLab/scTE;

· Fal564656 opened on Jul 7, 2025

Unable to locate .bed.gz output

Status: Open.

#114 In JiekaiLab/scTE;

· HElias01 opened on May 17, 2025

ValueError: X needs to be 2-dimensional, not 1-dimensional.

Status: Open.

#113 In JiekaiLab/scTE;

· Jinloong-dream opened on May 8, 2025

scATAC of scTE

Status: Open.

#111 In JiekaiLab/scTE;

· crystal0721 opened on Apr 1, 2025

mkdir code fails to use full path specified with -o option

Status: Open.

#109 In JiekaiLab/scTE;

· buddej opened on Jan 24, 2025

Cell number from scTE were not consistent with cellranger

Status: Open.

#108 In JiekaiLab/scTE;

· sixingchen718 opened on Dec 17, 2024

No mitochondrial genes after the run

Status: Open.

#107 In JiekaiLab/scTE;

· l1y1y opened on Dec 4, 2024

Error: X needs to be 2-dimensional, not 1-dimensional for bam file with more than 3000 cells

Status: Open.

#106 In JiekaiLab/scTE;

· OwenHoare1989 opened on Nov 21, 2024

Could you please check if there is an issue with my script? I’ve been running it for several days, but there are no results being output.

Status: Open.

#105 In JiekaiLab/scTE;

· l1y1y opened on Nov 14, 2024

suggestions for installation

Status: Open.

#104 In JiekaiLab/scTE;

· jennifersun09b opened on Nov 14, 2024