GitHub Issue #875: LuminexUpgradeCode.checkForMissingSummaryRows

[cnathe]

Rationale

Related to #875 Luminex Multi-File Transform Import Skips First Data Row

For one of the Luminex clients, a set of the assay runs that are missing data rows for the multi-file input case includes rows where the run included both summary and raw data rows and just the summary data rows are missing. In the case of background type rows, these summary rows can be recalculated and inserted into the DB attached to the assay run (dataid, analyteid, type). This PR adds a Java upgrade script which will not be triggered via the regular SQL upgrade path but will instead of available for a site admin to manually run on the client's server.

Related Pull Requests

• GitHub Issue 875: Assay Multi-File Transform Import Skips First Data Row platform#7456

Changes

• java upgrade script for the Luminex case of missing summary background type rows for runs that have both summary and raw data

[cnathe]

Step 1: from the admin console > sql scripts > upgrade code, select Luminex checkForMissingSummaryRows and invoke:

Step 2: review log info / warnings to see list of affected / updated runs:

Step 3: review audit logs inserted for rows affected: