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PotentialDams Query Update #894

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PotentialDams Query Update #894

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17 changes: 14 additions & 3 deletions snprc_ehr/resources/queries/study/PotentialDams.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ PARAMETERS
selectedOptionParm VARCHAR DEFAULT 'Birth' -- Birth or Acquisition
)
-- TODO: Do we want to limit selection to animals that were co-located with dam?
SELECT d.id as Dam,
SELECT DISTINCT d.id as Dam,
d.species as Species,
d.species.arc_species_code as ArcSpeciesCode,
d.gender as Gender,
Expand Down Expand Up @@ -43,14 +43,25 @@ FROM study.demographics AS d
SELECT 185 as gestation, timestampadd('SQL_TSI_DAY', -185, birthdateParm ) as minConceptionDate, 'O' as species
) AS y ON CASE WHEN d.species.arc_species_code IN ('PC', 'CJ', 'MM', 'MF', 'PT','MA') then d.species.arc_species_code ELSE 'O' END = y.species
INNER JOIN study.acq_disp as ad on d.id = ad.id
LEFT JOIN (
SELECT DISTINCT edc.Id
FROM study.pregnancyConfirmation edc
WHERE edc.termCode <= 28
) AS confirmed_pregnant ON d.id = confirmed_pregnant.Id
WHERE d.gender = 'F'
-- age at conception is greater or equal to minimum adult age and less than or equal to maximum adult age
-- LK has trouble matching parameters correctly using the code below, so minConceptionDate was added to the y result set
--AND x.minAdultAge <= ROUND(CAST(age_in_months(d.birth, timestampadd('SQL_TSI_DAY', -y.gestation, coalesce(birthdateParm, curdate()) ) ) AS DOUBLE) / 12.0, 1)
AND ROUND(CAST(age_in_months(d.birth, y.minConceptionDate ) AS DOUBLE) / 12.0, 1) between (x.minAdultAge * .95) and x.maxAdultAge
-- ensure animal was at txbiomed on date of conception for birth type acquisitions
AND (timestampadd('SQL_TSI_DAY', -y.gestation, birthdateParm) BETWEEN ad.acq_date AND COALESCE(ad.disp_date, birthdateParm) OR selectedOptionParm = 'Acquisition')
-- also include animals already confirmed pregnant (on active pregnancy list) as conception is proven
AND (timestampadd('SQL_TSI_DAY', -y.gestation, birthdateParm) BETWEEN ad.acq_date AND COALESCE(ad.disp_date, birthdateParm)
OR selectedOptionParm = 'Acquisition'
OR confirmed_pregnant.Id IS NOT NULL)
-- make sure animal was alive (at center) on conception date for birth type acquisitions
AND (COALESCE(d.lastDayAtCenter, birthdateParm) >= timestampadd('SQL_TSI_DAY', -y.gestation, birthdateParm) OR selectedOptionParm = 'Acquisition')
-- also include animals already confirmed pregnant (on active pregnancy list) as conception is proven
AND (COALESCE(d.lastDayAtCenter, birthdateParm) >= timestampadd('SQL_TSI_DAY', -y.gestation, birthdateParm)
OR selectedOptionParm = 'Acquisition'
OR confirmed_pregnant.Id IS NOT NULL)
-- drop off animals that were not alive on the conception date
AND d.id.age.ageInYears >= ROUND(CAST(age_in_months(d.birth, y.minConceptionDate ) AS DOUBLE) / 12.0, 1)