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2 changes: 1 addition & 1 deletion modules/volcano/module.yml
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ entrypoint: runtime/run.sh
inputs_schema: schemas/inputs.schema.json
outputs_schema: schemas/outputs.schema.json
runtime_root: runtime
source_template: Volcano_Plot_Enhanced_v85.R
source_template: Volcano_Plot_Enhanced.R
template_version: 85
data_policy: External execution platforms provide production inputs; repository stores docs and tiny examples only.
sync_policy: Bidirectional sync is limited to modules/volcano/runtime via branch and PR.
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6 changes: 3 additions & 3 deletions modules/volcano/runtime/code/DEVELOPER.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,12 +4,12 @@ Technical implementation details for developers and maintainers.

## Architecture

This capsule is a runtime bundle for enhanced volcano plots from differential-expression tables. It is sourced from `Volcano_Plot_Enhanced_v85.R` and runs the `volcano_plot_enhanced()` function.
This capsule is a runtime bundle for enhanced volcano plots from differential-expression tables. It is sourced from `Volcano_Plot_Enhanced.R` and runs the `volcano_plot_enhanced()` function.

### Core Components

- **Main entry point**: `/code/main.R` - CLI interface with optparse
- **Plotting function**: `/code/functions/Volcano_Plot_Enhanced_v85.R` - Core visualization logic
- **Plotting function**: `/code/functions/Volcano_Plot_Enhanced.R` - Core visualization logic
- **Execution script**: `/code/run` - Bash driver for reproducible runs

## Input Specification
Expand Down Expand Up @@ -121,7 +121,7 @@ Uses `ggrepel::geom_text_repel()` to prevent label overlap.
├── main.R # CLI entry point
├── run # Bash execution script
├── functions/
│ └── Volcano_Plot_Enhanced_v85.R # Core plotting function
│ └── Volcano_Plot_Enhanced.R # Core plotting function
└── DEVELOPER.md # This file

/data/
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