PAL-1216 Add unit tests for important medhelm scenarios#16
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Adds pytest coverage for HELM medical scenarios: ACI-Bench, EHR-SQL, HeadQA, MedBullets, MedEC, MediQA, MedicationQA, MedDialog, MedMCQA, MT-Samples (procedures and replicate), and PubMedQA. Each test asserts scenario metadata and instance wiring consistent with existing scenario patterns. Co-authored-by: Cursor <cursoragent@cursor.com>
Mock pd.read_excel alongside ensure_file_downloaded so unit tests no longer write xlsx via openpyxl (optional dependency missing under pytest defaults). Declare openpyxl under medhelm[s] scenarios for real spreadsheet reads and update uv.lock accordingly. Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
…data narrow) - Med MCQA: use Optional[list[Any]] for patched JSONL defaults (no_implicit_optional). - HeadQA / EHR-SQL: narrow Instance.extra_data before indexing or combine checks so dict[str, Any] | None is valid. Co-authored-by: Cursor <cursoragent@cursor.com>
iulianigas
changed the title
HeadQA (dvilares/head_qa) and InfiniteBench loaders use Hub repos with custom scripts; newer datasets rejects interactive prompts on Linux runners unless trust_remote_code is set explicitly. Co-authored-by: Cursor <cursoragent@cursor.com>
pratacosmin
approved these changes
May 12, 2026
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Adds pytest coverage for HELM medical scenarios: ACI-Bench, EHR-SQL, HeadQA, MedBullets, MedEC, MediQA, MedicationQA, MedDialog, MedMCQA, MT-Samples (procedures and replicate), and PubMedQA. Each test asserts scenario metadata and instance wiring consistent with existing scenario patterns.