Make Pynteny pip-only: remove bioconda references and conda recipes#99
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The package is distributed via pip only now, so remove the remaining conda / bioconda references that described the old build: - README.md: drop the four Anaconda/Bioconda badges, remove the "install with conda" block, and remove `conda activate pynteny` from the usage snippet. Update the Python badge to 3.9 | 3.12. - docs/index.md: remove the conda install block. - Installation now points to `pip install git+https://github.com/Robaina/Pynteny.git` with a note that `pip install pynteny` will work once published to PyPI (the package is not on PyPI yet, so the plain `pip install pynteny` line was not actually installable). The Colab example uses the git install too. - Remove the obsolete conda packaging recipes (.conda/, .bioconda/). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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Follow-up to #98. Now that Pynteny is distributed as a pure-pip package, this removes the leftover conda/bioconda references that still described the old build.
Changes
conda activate pyntenyfrom the usage snippet; updated the Python badge to3.9 | 3.12.pip install git+https://github.com/Robaina/Pynteny.git, with a note thatpip install pyntenywill work once published to PyPI. (Pynteny is not on PyPI yet — the plainpip install pyntenyline was not actually installable.) The Colab example notebook uses the git install too..conda/and.bioconda/.Not touched (still conda-based, left functional)
envs/pynteny-dev.ymland.devcontainer/(miniconda) still work — they pip-install pyhmmer/pyrodigal inside a conda env. Happy to convert these to a pure-pip dev/devcontainer setup in a follow-up if wanted.Note on PyPI
Pynteny isn't published to PyPI, so
pip install pyntenywon't work until a release is set up. Consider a release/publish workflow (e.g.pypa/gh-action-pypi-publishon tag) so the documented command becomes valid.🤖 Generated with Claude Code