Minor changes and refinements

[ypriverol]

Summary by CodeRabbit

Release Notes

• Chores
  • Version updated to 0.0.27
  • Updated build system configuration and related development requirements
  • Refined runtime dependency version constraints for consistency
  • Reorganized package metadata structure and configuration layout
  • Enhanced declaration of package entry points

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ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 68068568-054e-4870-b90e-08676f4b0dae

📥 Commits

Reviewing files that changed from the base of the PR and between 9e90db6 and 0bd595a.

⛔ Files ignored due to path filters (3)

• .DS_Store is excluded by !**/.DS_Store
• quantmsutils/.DS_Store is excluded by !**/.DS_Store
• tests/.DS_Store is excluded by !**/.DS_Store

📒 Files selected for processing (5)

• .github/workflows/conda-build.yml
• .gitignore
• pyproject.toml
• recipe/conda_build_config.yaml
• recipe/meta.yaml

📝 Walkthrough

Walkthrough

Migrates project packaging from Poetry to PEP 621-compliant metadata with Hatch build system. Replaces static version declaration with dynamic VCS-based versioning. Updates Conda recipe with new build tool dependencies, package version, and sdrf-pipelines constraint.

Changes

Cohort / File(s)	Summary
Build system migration pyproject.toml	Transitions packaging configuration from [tool.poetry] to [project] format. Converts version from static field to dynamic VCS-sourced value via Hatch. Relocates dependencies, URLs, and script entry points to PEP 621 sections. Replaces poetry-core with hatchling build backend.
Conda recipe updates recipe/meta.yaml	Bumps package version from 0.0.26 to 0.0.27. Replaces build host requirements from poetry-core >=1.2.0 to hatchling and hatch-vcs. Updates runtime dependency for sdrf-pipelines from >=0.1.1 to >=0.1.2.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~10 minutes

Possibly related PRs

• PR #56: Modifies sdrf-pipelines runtime dependency version constraint in the same Conda recipe file
• PR #32: Updates sdrf-pipelines dependency version in recipe/meta.yaml with similar structural changes
• PR #71: Includes both package version bump and sdrf-pipelines dependency constraint increase in the same files

Poem

🐰 From Poetry's verse to Hatch's dynamic rhyme,
Our build system evolves with the march of time,
Static versions yield to VCS's call,
PEP 621 standards guide us all! ✨

🚥 Pre-merge checks | ✅ 2 | ❌ 1

❌ Failed checks (1 inconclusive)

Check name	Status	Explanation	Resolution
Title check	❓ Inconclusive	The title 'Dev' is vague and generic, failing to convey meaningful information about the substantial changes made to the project's build system and dependencies.	Use a descriptive title that reflects the main change, such as 'Migrate from Poetry to Hatch build system' or 'Switch packaging configuration from Poetry to PEP 621 with Hatch'.

✅ Passed checks (2 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch dev

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[ypriverol]

@copilot can you fix this this: python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
pip install poetry
poetry build
pip install dist/*.whl
shell: /usr/bin/bash -e {0}
env:
pythonLocation: /opt/hostedtoolcache/Python/3.10.20/x64

Is produceing error

[Copilot]

@copilot can you fix this this: python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
...

Fixed in commit 29bce25. The project migrated from Poetry to Hatchling, but the CI workflow still called poetry build, which failed because [tool.poetry.version] is no longer present. Replaced pip install poetry + poetry build with pip install build + python -m build, which uses the Hatchling build backend defined in pyproject.toml.

[ypriverol]

@copilot still we have an issue python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
pip install poetry
poetry build
pip install dist/*.whl
shell: /usr/bin/bash -e {0}
env:
pythonLocation: /opt/hostedtoolcache/Python/3.10.20/x64

[Copilot]

@copilot still we have an issue python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
...

The python-app.yml workflow also still had pip install poetry + poetry build + poetry run pytest. Fixed in commit df7a417 — same approach: replaced with pip install build + python -m build + plain pytest.