Bump the python-packages group with 7 updates by dependabot[bot] · Pull Request #418 · cytomining/CytoTable

dependabot · 2026-03-01T19:21:05Z

Bumps the python-packages group with 7 updates:

Package	From	To
pyarrow	`23.0.0`	`23.0.1`
parsl	`2026.2.9`	`2026.2.23`
botocore	`1.42.46`	`1.42.59`
pycytominer	`1.3.1`	`1.4.0`
dunamai	`1.25.0`	`1.26.0`
jupyterlab	`4.5.4`	`4.5.5`
isort	`7.0.0`	`8.0.1`

Updates pyarrow from 23.0.0 to 23.0.1

Release notes

Sourced from pyarrow's releases.

Apache Arrow 23.0.1

Release Notes URL: https://arrow.apache.org/release/23.0.1.html

Apache Arrow 23.0.1 RC0

Release Notes: Release Candidate: 23.0.1 RC0

Commits

82a374e MINOR: [Release] Update versions for 23.0.1
c1ae37c MINOR: [Release] Update .deb/.rpm changelogs for 23.0.1
8f6e557 MINOR: [Release] Update CHANGELOG.md for 23.0.1
4e16a1a GH-49159: [C++][Gandiva] Detect overflow in repeat() (#49160)
985621d GH-48817 [R][C++] Bump C++20 in R build infrastructure (#48819)
1bea06a GH-49024: [CI] Update Debian version in .env (#49032)
147bcd6 GH-49156: [Python] Require GIL for string comparison (#49161)
e4f922b GH-49138: [Packaging][Python] Remove nightly cython install from manylinux wh...
f9376e4 GH-49003: [C++] Don't consider out_of_range an error in float parsing (#49095)
ab2c0ad GH-49044: [CI][Python] Fix test_download_tzdata_on_windows by adding required...
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Updates parsl from 2026.2.9 to 2026.2.23

Commits

e5c6bcf Remove content-free test_flowcontrol directory (#4079)
ae6c4a1 Refactor polling loop to combine state update and error handling (#4078)
7aface5 Add gpus_per_node and gres options to SlurmProvider (#4077)
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Updates botocore from 1.42.46 to 1.42.59

Commits

c204bb1 Merge branch 'release-1.42.59'
7e59865 Bumping version to 1.42.59
b38a03c Update to latest models
97336ff Merge customizations for ARC Region switch
f76046b Merge branch 'release-1.42.58'
be2689a Merge branch 'release-1.42.58' into develop
47f8789 Bumping version to 1.42.58
14bc74f Update to latest models
8c0427a Add support for None values in list parsing (#3618)
86d9ec3 Merge branch 'release-1.42.57'
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Updates pycytominer from 1.3.1 to 1.4.0

Release notes

Sourced from pycytominer's releases.

v1.4.0 (2026-02-20)

What's Changed

build(deps): bump urllib3 from 2.6.0 to 2.6.3 by @dependabot[bot] in cytomining/pycytominer#614

build(deps-dev): bump virtualenv from 20.26.6 to 20.36.1 by @dependabot[bot] in cytomining/pycytominer#616

build(deps-dev): bump filelock from 3.20.1 to 3.20.3 by @dependabot[bot] in cytomining/pycytominer#617

build(deps-dev): bump the python-packages group with 2 updates by @dependabot[bot] in cytomining/pycytominer#618

build(deps-dev): bump ipython from 8.37.0 to 8.38.0 by @dependabot[bot] in cytomining/pycytominer#619

build(deps): bump pyarrow from 22.0.0 to 23.0.0 by @dependabot[bot] in cytomining/pycytominer#620

build(deps): bump sqlalchemy from 2.0.45 to 2.0.46 by @dependabot[bot] in cytomining/pycytominer#621

build(deps-dev): bump nbconvert from 6.5.4 to 7.17.0 by @dependabot[bot] in cytomining/pycytominer#623

refactor: add output decorator for repeated use by @d33bs in cytomining/pycytominer#600

feat: add cli for core functions by @d33bs in cytomining/pycytominer#622

bump: version 1.3.1 -> 1.4.0 by @d33bs in cytomining/pycytominer#628

Full Changelog: cytomining/pycytominer@v1.3.1...v1.4.0

Changelog

Sourced from pycytominer's changelog.

v1.4.0 (2026-02-20)

Detailed release notes

Feat

add cli for core functions (#622)

Refactor

add output decorator for repeated use (#600)

Build

deps: various dependency updates automated by dependabot

Commits

ba82470 bump: version 1.3.1 -> 1.4.0 (#628)
7aa1300 feat: add cli for core functions (#622)
b0bab61 refactor: add output decorator for repeated use (#600)
8b748fa build(deps-dev): bump nbconvert from 6.5.4 to 7.17.0 (#623)
eccf593 build(deps): bump sqlalchemy from 2.0.45 to 2.0.46 (#621)
4e88761 build(deps): bump pyarrow from 22.0.0 to 23.0.0 (#620)
fc0a62f build(deps-dev): bump ipython from 8.37.0 to 8.38.0 (#619)
269458b build(deps-dev): bump the python-packages group with 2 updates (#618)
5327328 build(deps-dev): bump filelock from 3.20.1 to 3.20.3 (#617)
887e55e build(deps-dev): bump virtualenv from 20.26.6 to 20.36.1 (#616)
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Updates dunamai from 1.25.0 to 1.26.0

Release notes

Sourced from dunamai's releases.

v1.26.0 (2026-02-14)

Added --highest-tag option to select the numerically highest version, even if it is not the chronologically latest tag.

Changelog

Sourced from dunamai's changelog.

v1.26.0 (2026-02-14)

Added --highest-tag option to select the numerically highest version, even if it is not the chronologically latest tag.

Commits

70939d3 Release v1.26.0
71b11d7 Switch to tool.poetry.group.dev.dependencies
78b4283 Use 'git tag --no-sign' in tests
a41b416 Add --highest-tag option
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Updates jupyterlab from 4.5.4 to 4.5.5

Release notes

Sourced from jupyterlab's releases.

v4.5.5

4.5.5

(Full Changelog)

Bugs fixed

Fix theme settings broken in non-English locales #18530 (@apoorvdarshan)

Fix comms subshell resource management on disposal and when changing settings #18531 (@krassowski)

Upgrade @codemirror/view, fixing slow selection when line wrapping is enabled #18479 (@krassowski)

Only turn off overflow anchor when windowing is active #18503 (@jasongrout)

Fix table of contents navigation for Markdown files #18411 (@itsmevichu)

Maintenance and upkeep improvements

Update to marked 17.0.2 and mermaid 11.12.3 #18532 (@bollwyvl, @krassowski)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@apoorvdarshan (activity) | @bollwyvl (activity) | @itsmevichu (activity) | @jasongrout (activity) | @krassowski (activity)

Commits

72d29f4 [ci skip] Publish 4.5.5
4a223c0 Backport PR #18530 on branch 4.5.x (Fix theme settings broken in non-English ...
2d54b65 Backport PR #18531 on branch 4.5.x (Fix comms subshell resource management on...
5f01903 Update to marked 17.0.2 and mermaid 11.12.3 (#18532)
1fa6809 Backport PR #18479 on branch 4.5.x (Upgrade @codemirror/view, fixing slow sel...
277f814 Backport PR #18503 on branch 4.5.x (Only turn off overflow anchor when window...
b824b96 Backport PR #18411 on branch 4.5.x (Fix table of contents navigation for Mark...
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Updates isort from 7.0.0 to 8.0.1

Release notes

Sourced from isort's releases.

8.0.0

Changes

Update CHANGELOG for version 8.0.0 (#2460) @DanielNoord

Fix edge case of __future__ import. (#2458) @skv0zsneg

Fix the Plone profile to be compatible with black (#2457) @ale-rt

typo fix (#2450) @jsta

Remove the setuptools plugin (#2427) @DanielNoord

Turn some warnings into errors in test suite (#2449) @DanielNoord

chore: replace black with ruff in clean.sh (#2448) @joao-faria-dev

feat!: remove old finders flag and legacy finder logic (#2446) @joao-faria-dev

Fix whitespace insensitive check triggering on tabs (#2437) @robsdedude

Fix line separator detection not considering form feed as white space (#2436) @robsdedude

Fix #1964: lines_before_import sometimes ignored (#1965) @robsdedude

Remove reference to 3.9 in README (#2434) @DanielNoord

🚀 Features

Ensure multiprocessing.Pool is always closed and joined (#2442) @DanielNoord

👷 Continuous Integration

Simplify CI by putting similar steps into a single action file (#2444) @DanielNoord

📦 Dependencies

Bump actions/checkout from 5 to 6 in the github-actions group (#2451) @dependabot[bot]

Bump astral-sh/setup-uv from 6 to 7 in the github-actions group (#2441) @dependabot[bot]

Changelog

Sourced from isort's changelog.

Changelog

NOTE: isort follows the semver versioning standard. Find out more about isort's release policy here.

Unreleased

8.0.0 February 19 2026

Removed --old-finders and --magic-placement flags and old_finders configuration option. The legacy finder logic that relied on environment introspection has been removed (#2445) @joao-faria-dev

Update the plone profile to not clash with black (#2456) @ale-rt

6.1.0 October 1 2025

Add python 3.14 classifier and badge (#2409) @staticdev

Drop use of non-standard pkg_resources API (#2405) @dvarrazzo

6.0.1 Febuary 26 2025

Add OSError handling in find_imports_in_file (#2331) @kobarity

6.0.0 January 27 2025

Remove support for Python 3.8 (#2327) @DanielNoord

Python 3.13 support (#2306) @mayty

Speed up exists_case_sensitive calls (#2264) @correctmost

Ensure that split_on_trailing_comma works with as imports (#2340) @DanielNoord

Black profile: enable magic comma (#2236) @MrMino

Update line_length and single_line_exclusions in google profile (#2149) @jagapiou

Allow --diff to be used with --jobs (#2302) @mnakama

Fix wemake profile to have correct character limit (#2241) @sobolevn

Fix sort_reexports code mangling (#2283) @Helveg

Fix correct group by package tokenization (#2136) @glasnt

5.13.2 December 13 2023

Apply the bracket fix from issue #471 only for use_parentheses=True (#2184) @bp72

Confine pre-commit to stages (#2213) @davidculley

Fixed colors extras (#2212) @staticdev

5.13.1 December 11 2023

Fixed integration tests (#2208) @bp72

Fixed normalizing imports from more than one level of parent modules (issue/2152) (#2191) @bp72

Remove optional dependencies without extras (#2207) @staticdev

5.13.0 December 9 2023

Cleanup deprecated extras (#2089) @staticdev

... (truncated)

Commits

a333737 Merge pull request #2463 from FinlayTheBerry/issue/2461
878ba7e Added compression to stdlibs for Python 3.14 in isort/stdlibs/py314.py
b5f06a7 Merge pull request #2459 from Fridayai700/fix-unindented-comment-corruption
3459bde Merge pull request #2460 from PyCQA/DanielNoord-patch-1
6e70bb6 Update CHANGELOG for version 8.0.0
fd2514b Fix unindented comments being corrupted in indented blocks
b0f2dab Merge pull request #2458 from skv0zsneg/issue/1882
313797b Fix lint.
7d3a6f5 Add ignore for cyclomatic complexity check.
6b9f895 Remove debug prints.
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Bumps the python-packages group with 7 updates: | Package | From | To | | --- | --- | --- | | [pyarrow](https://github.com/apache/arrow) | `23.0.0` | `23.0.1` | | [parsl](https://github.com/Parsl/parsl) | `2026.2.9` | `2026.2.23` | | [botocore](https://github.com/boto/botocore) | `1.42.46` | `1.42.59` | | [pycytominer](https://github.com/cytomining/pycytominer) | `1.3.1` | `1.4.0` | | [dunamai](https://github.com/mtkennerly/dunamai) | `1.25.0` | `1.26.0` | | [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.5.4` | `4.5.5` | | [isort](https://github.com/PyCQA/isort) | `7.0.0` | `8.0.1` | Updates `pyarrow` from 23.0.0 to 23.0.1 - [Release notes](https://github.com/apache/arrow/releases) - [Commits](apache/arrow@apache-arrow-23.0.0...apache-arrow-23.0.1) Updates `parsl` from 2026.2.9 to 2026.2.23 - [Commits](Parsl/parsl@2026.02.09...2026.02.23) Updates `botocore` from 1.42.46 to 1.42.59 - [Commits](boto/botocore@1.42.46...1.42.59) Updates `pycytominer` from 1.3.1 to 1.4.0 - [Release notes](https://github.com/cytomining/pycytominer/releases) - [Changelog](https://github.com/cytomining/pycytominer/blob/main/CHANGELOG.md) - [Commits](cytomining/pycytominer@v1.3.1...v1.4.0) Updates `dunamai` from 1.25.0 to 1.26.0 - [Release notes](https://github.com/mtkennerly/dunamai/releases) - [Changelog](https://github.com/mtkennerly/dunamai/blob/master/CHANGELOG.md) - [Commits](mtkennerly/dunamai@v1.25.0...v1.26.0) Updates `jupyterlab` from 4.5.4 to 4.5.5 - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.5.4...@jupyterlab/lsp@4.5.5) Updates `isort` from 7.0.0 to 8.0.1 - [Release notes](https://github.com/PyCQA/isort/releases) - [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md) - [Commits](PyCQA/isort@7.0.0...8.0.1) --- updated-dependencies: - dependency-name: pyarrow dependency-version: 23.0.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: parsl dependency-version: 2026.2.23 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: botocore dependency-version: 1.42.59 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: pycytominer dependency-version: 1.4.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: dunamai dependency-version: 1.26.0 dependency-type: direct:development update-type: version-update:semver-minor dependency-group: python-packages - dependency-name: jupyterlab dependency-version: 4.5.5 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: python-packages - dependency-name: isort dependency-version: 8.0.1 dependency-type: direct:development update-type: version-update:semver-major dependency-group: python-packages ... Signed-off-by: dependabot[bot] <support@github.com>

dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Mar 1, 2026

dependabot bot requested a review from gwaybio as a code owner March 1, 2026 19:21

dependabot bot added the dependencies Pull requests that update a dependency file label Mar 1, 2026

dependabot bot requested a review from d33bs as a code owner March 1, 2026 19:21

dependabot bot added the python Pull requests that update Python code label Mar 1, 2026

Update .pre-commit-config.yaml

09b88d4

d33bs approved these changes Mar 8, 2026

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d33bs merged commit 832c97a into main Mar 8, 2026
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d33bs deleted the dependabot/pip/python-packages-57834bbde4 branch March 8, 2026 16:56

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Bump the python-packages group with 7 updates#418

Bump the python-packages group with 7 updates#418
d33bs merged 2 commits intomainfrom
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dependabot bot commented on behalf of github Mar 1, 2026

Apache Arrow 23.0.1

Apache Arrow 23.0.1 RC0

v1.4.0 (2026-02-20)

What's Changed

v1.4.0 (2026-02-20)

Feat

Refactor

Build

v1.26.0 (2026-02-14)

v1.26.0 (2026-02-14)

v4.5.5

4.5.5

Bugs fixed

Maintenance and upkeep improvements

Contributors to this release

8.0.0

Changes

🚀 Features

👷 Continuous Integration

📦 Dependencies

Changelog

Unreleased

8.0.0 February 19 2026

6.1.0 October 1 2025

6.0.1 Febuary 26 2025

6.0.0 January 27 2025

5.13.2 December 13 2023

5.13.1 December 11 2023

5.13.0 December 9 2023

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