fix(init): surface directory read errors - #1405
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The init directory walker currently catches every readdir failure and returns an empty array. A missing or unreadable directory is therefore indistinguishable from a genuinely empty repository and can produce a misleading no-files or unknown-platform bail.
Summary
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This PR is based on #1404 because both touch the directory walker. Its own diff only removes the silent readdir fallback and adds error-path coverage; scan metadata and exclusion policy remain in the preceding PR.
Test plan