mapa is a package used to merge redundant pathways and GO terms for transcriptomics and proteomics data.
You can install mapa from GitHub
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
remotes::install_github(
"jaspershen-lab/mapa",
dependencies = TRUE,
repos = BiocManager::repositories(),
upgrade = "ask"
)More information can be found here.
Please see the Help documents.
If you have any questions about mapa, please don’t hesitate to
email me ([email protected]) or reach out me via the social medias below.
59 Nanyang Dr, Singapore, Singapore 636921
If you use mapa in your publications, please cite this paper:
Yifei Ge, Feifan Zhang, Yijiang Liu, Chao Jiang, Peng Gao, Nguan Soon Tan, Sai Zhang, Yuchen Shen, Qianyi Zhou, Xin Zhou, Chuchu Wang, Xiaotao Shen. Leveraging Large Language Models for Redundancy-Aware Pathway Analysis and Deep Biological Interpretation.
Thanks very much!