Add parse pepcount#14
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clairemcwhite wants to merge 15 commits into
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refactored.
Removed bootstrapping and comparison to gold standard code
Removed commandline options relating to purged code
Eliminated unnecessary code
Proper output of parameters to file
Moved output of clusters to threads
checking for executable locations, removed some old code
faster, also allows for annotating edges with test and training
with edge case of no pairs that overlap with gold standard
sure how it was missed previously)
…t to convert from wide to long form elution
Clustering refactor
…ex_maps into add_parse_pepcount
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And I even rewrote the wide -> tidy in python. Going above and beyond |
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Add option to parse pepcount files to msblender2elution.
Also a script to take a wide format elution and convert to a long/tidy format. This script was with my stuff, and makes more sense in preprocessing.