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simplify TEMPLATE with nf-core-utils 0.4.0#3870

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maxulysse wants to merge 2 commits intonf-core:devfrom
maxulysse:topics_and_nf-core-utils
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simplify TEMPLATE with nf-core-utils 0.4.0#3870
maxulysse wants to merge 2 commits intonf-core:devfrom
maxulysse:topics_and_nf-core-utils

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@maxulysse maxulysse commented Nov 4, 2025

Need NXF_VER 25.10.0

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  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

@maxulysse maxulysse marked this pull request as draft November 4, 2025 12:47
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codecov Bot commented Nov 4, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 77.36%. Comparing base (884c849) to head (0771605).
⚠️ Report is 481 commits behind head on dev.

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@maxulysse maxulysse marked this pull request as ready for review November 4, 2025 14:55
include { paramsSummaryMap } from 'plugin/nf-schema'{% endif %}
{%- if multiqc %}
include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline'{% endif %}
include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
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I guess you're not deleting this in the PR here because it needs to be removed upstream and then updated? Is there a corresponding PR in nf-core/modules?

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Actually my end goal is to totally remove the need for all utils subworklows and use the nf-core-utils plugin instead.
So no plan to remove from the modules yet, I think I will just let it die there

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But there should be a separate PR here to actually change the paramsSummaryMultiqc function from the subworkflow to the plugin, and so on...

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3 participants