update versioning and add requirements.txt

application/app_v1.py

@@ -4,7 +4,7 @@
 
 # Import modules
 from flask import Flask
-from flask_restplus import Api, Resource
+from flask_restx import Api, Resource
 
 # Define the application as a Flask app with the name defined by __name__ (i.e. the name of the current module)
 # Most tutorials define application as "app", but I have had issues with this when it comes to deployment,
@@ -28,4 +28,4 @@ def get(self):
 # Allows app to be run in debug mode
 if __name__ == '__main__':
 	application.debug = True # Enable debugging mode
-	application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app
+	application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app

application/app_v2.py

@@ -4,7 +4,7 @@
 
 # Import modules
 from flask import Flask
-from flask_restplus import Api, Resource
+from flask_restx import Api, Resource
 
 # Define the application as a Flask app with the name defined by __name__ (i.e. the name of the current module)
 # Most tutorials define application as "app", but I have had issues with this when it comes to deployment,

application/app_v3.py

@@ -4,7 +4,7 @@
 
 # Import modules
 from flask import Flask
-from flask_restplus import Api, Resource
+from flask_restx import Api, Resource
 import _____
 
 # Define the application as a Flask app with the name defined by __name__ (i.e. the name of the current module)
@@ -48,4 +48,4 @@ def get(self, _____):
 # Allows app to be run in debug mode
 if __name__ == '__main__':
     application.debug = True # Enable debugging mode
-    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app
+    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app

application/app_v4.py

@@ -4,7 +4,7 @@
 
 # Import modules
 from flask import Flask, make_response
-from flask_restplus import Api, Resource
+from flask_restx import Api, Resource
 import requests
 from dicttoxml import dicttoxml
 
@@ -65,4 +65,4 @@ def get(self, genome_build, variant_description, select_transcripts):
 # Allows app to be run in debug mode
 if __name__ == '__main__':
     application.debug = True # Enable debugging mode
-    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app
+    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app

application/app_v5.py

@@ -4,7 +4,7 @@
 
 # Import modules
 from flask import Flask, make_response
-from flask_restplus import Api, Resource, reqparse
+from flask_restx import Api, Resource, reqparse
 import requests
 from dicttoxml import dicttoxml
 
@@ -139,4 +139,4 @@ def get(self, genome_build, variant_description, select_transcripts):
 # Allows app to be run in debug mode
 if __name__ == '__main__':
     application.debug = True # Enable debugging mode
-    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app
+    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app

application/app_v6.py

@@ -4,7 +4,7 @@
 
 # Import modules
 from flask import Flask, make_response, request
-from flask_restplus import Api, Resource, reqparse, fields, abort
+from flask_restx import Api, Resource, reqparse, fields, abort
 import requests
 from requests.exceptions import ConnectionError
 from dicttoxml import dicttoxml
@@ -231,4 +231,4 @@ def default_error_handler(e):
 # Allows app to be run in debug mode
 if __name__ == '__main__':
     application.debug = True # Enable debugging mode
-    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app
+    application.run(host="127.0.0.1", port=5000) # Specify a host and port fot the app

application/requirements.txt

@@ -1,3 +1,17 @@
-flask==1.1.1
-flask_restplus
-Werkzeug==0.16.1
+aniso8601==9.0.1
+attrs==23.1.0
+click==8.1.7
+Flask
+flask-restx
+itsdangerous==2.1.2
+Jinja2==3.1.2
+jsonschema==4.19.1
+jsonschema-specifications==2023.7.1
+MarkupSafe==2.1.3
+pytz==2023.3.post1
+referencing==0.30.2
+rpds-py==0.10.6
+six==1.16.0
+Werkzeug==2.3.3
+requests
+dicttoxml

application/rest_api/app.py

@@ -1,5 +1,5 @@
 """
-Simple rest interface for VariantValidator built using Flask Flask-RESTPlus and Swagger UI
+Simple rest interface for VariantValidator built using Flask Flask-RESTX and Swagger UI
 """
 
 # Import modules
@@ -46,7 +46,7 @@
 Representations
  - Adds a response-type into the "Response content type" drop-down menu displayed in Swagger
  - When selected, the APP will return the correct response-header and content type
- - The default for flask-RESTPlus is application/json
+ - The default for flask-RESTX is application/json
 
 Note 
  - The decorators are assigned to the functions

application/rest_api/endpoints/__init__.py

@@ -1,4 +1,4 @@
-from flask_restplus import Api
+from flask_restx import Api
 
 from .hello import api as ns_hello
 from .name import api as ns_name
@@ -14,4 +14,4 @@
 
 api.add_namespace(ns_hello)
 api.add_namespace(ns_name)
-api.add_namespace(ns_vv)
+api.add_namespace(ns_vv)

application/rest_api/endpoints/hello.py

@@ -1,4 +1,4 @@
-from flask_restplus import Namespace, Resource
+from flask_restx import Namespace, Resource
 from . import request_parser
 from . import representations
 

application/rest_api/endpoints/name.py

@@ -1,4 +1,4 @@
-from flask_restplus import Namespace, Resource
+from flask_restx import Namespace, Resource
 from . import request_parser
 from . import representations
 

application/rest_api/endpoints/request_parser.py

@@ -1,4 +1,4 @@
-from flask_restplus import reqparse
+from flask_restx import reqparse
 
 
 # Create a RequestParser object to identify specific content-type requests in HTTP URLs

application/rest_api/endpoints/variantvalidator_endpoints.py

@@ -1,4 +1,4 @@
-from flask_restplus import Namespace, Resource
+from flask_restx import Namespace, Resource
 from . import request_parser
 from . import representations
 import requests