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@CompGenLabUB Computational Genomics Lab @ UB

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    12 repositories

    • CAPTVRED

      Public
      Analysis pipeline for capture-based viral metagenomics projects.
      HTML
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jan 28, 2026Jan 28, 2026

    • 2022_NatComm_BImethods

      Public
      Bioinformatics supplementary material for Pascual-Carreras et al, 2022.
      R
      •0•1•0•0•Updated Jan 19, 2023Jan 19, 2023

    • CGL

      Public
      Generic modules for the Computational Genomics Lab
      Perl
      •1•1•0•0•Updated May 30, 2019May 30, 2019

    • PlanNET

      Public
      Website to explore predicted planarian protein-protein interactions.
      HTML
      •1•0•0•0•Updated Jan 23, 2019Jan 23, 2019

    • ggdisplot

      Public
      Scatter plot with two density plots.
      R
      •1•0•0•0•Updated Sep 5, 2018Sep 5, 2018

    • seqlenplot

      Public
      R script to plot a comparison of protein and transcript/DNA length.
      R
      •1•1•0•0•Updated Jun 21, 2018Jun 21, 2018

    • graph2neo4j

      Public
      Scripts to create csv files for uploading interaction graphs to neo4j.
      Perl
      •0•0•0•0•Updated May 8, 2018May 8, 2018

    • ppaxe

      Public
      Text mining tool to retrieve protein-protein interactions
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated May 7, 2018May 7, 2018

    • expression_to_graph

      Public
      Scripts to map expression information onto an svg graph
      Perl
      •1•0•0•0•Updated Dec 13, 2017Dec 13, 2017

    • brh_coverage

      Public
      Simple R script to make coverage plots.
      R
      •1•0•0•0•Updated Sep 28, 2017Sep 28, 2017

    • PlanNET-software

      Public
      Scripts to predict the PlanNET networks.
      Perl
      •1•0•0•0•Updated Sep 28, 2017Sep 28, 2017

    • graphcompare

      Public
      Application to compare graph files.
      Perl
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jun 2, 2017Jun 2, 2017
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