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sdrf-pipelines
Public`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
quantmsdiann
Publicsdrf-annotated-datasets
Publicmsgfplus
PublicMS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.sdrfedit
Publicsdrf-skills
PublicAgentic plugins to annotate SDRF using Claude; Codex; Cursor; Geminisdrf-templates
Publicrelink
Publicnf-modules
Publicqpx
Publicquantms-containers
Publichvantk
Publicquantms
PublicQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quant…mokume
Publicspectrafuse
Publicpyspectrafuse
PublicpIR
PublicEstimation of isoelectric point of peptides and proteins using support vector machines (SVM).pmultiqc
PublicA library for QC report based on MultiQC frameworkquantms-rescoring
Publicquantms-utils
PublicA python library with scripts and helpers classes for quantms workflowquantms-portal
Publicquantms.org
Publicfslite
PublicLightweight Feature selection Python libraryquantms-test-datasets
Publiccrosslinking-datasets
Publictechsdrf
Publicpgatk
PublicPython tools for proteogenomics analysis toolkitquantms-readthedocs
Public
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