MancusoLab

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20 repositories

jaxqtl
Public
Flexible, scalable, QTL analyses using generalized linear models implemented in JAX
glm qtl-mapping jax molqtl
Python
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MIT License
•3•13•13•1•Updated Dec 15, 2025Dec 15, 2025
sushie
Public
Software to perform multi-ancestry SNP fine-mapping on molecular data
python gwas genetics bayesian-inference variational-inference eqtl susie jax fine-mapping pqtl
Linker Script
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MIT License
•5•28•0•0•Updated Dec 6, 2025Dec 6, 2025
perturbvi
Public
Python
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MIT License
•0•0•0•0•Updated Dec 4, 2025Dec 4, 2025
scfm
Public
Python
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MIT License
•0•0•0•0•Updated Nov 4, 2025Nov 4, 2025
traceax
Public
Stochastic trace estimation using JAX
statistics python3 machine-learn jax trace-est
Python
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Apache License 2.0
•3•15•2•1•Updated Aug 20, 2025Aug 20, 2025
traceax_analysis
Public
analysis scripts for traceax
Python
•0•0•0•0•Updated Aug 20, 2025Aug 20, 2025
sushie-project-codes
Public
The analysis codes for sushie project
R
•0•1•0•0•Updated May 31, 2025May 31, 2025
jaxqtl_analysis
Public
Analysis code for jaxqtl paper
R
•
MIT License
•1•2•0•0•Updated May 7, 2025May 7, 2025
perturbvi_analysis
Public
Analysis code for perturbvi
R
•0•0•0•0•Updated Mar 28, 2025Mar 28, 2025
FactorGo
Public
Software to infer latent pleiotropic components from GWAS summary data
gwas variational-inference jax gwas-summary-statistics
Python
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MIT License
•0•15•0•0•Updated Jan 30, 2025Jan 30, 2025
ma-focus
Public
MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
Python
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GNU General Public License v3.0
•8•38•7•0•Updated Apr 26, 2024Apr 26, 2024
geneax
Public
Python
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Apache License 2.0
•0•0•3•0•Updated Feb 21, 2024Feb 21, 2024
susiepca
Public
Scalable Ultra-Sparse Bayesian PCA
python machine-learning pca bayesian-inference factor-analysis variational-inference jax
Python
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MIT License
•7•31•4•0•Updated Feb 13, 2024Feb 13, 2024
gdf15_analyses
Public
R
•0•0•0•0•Updated Sep 14, 2023Sep 14, 2023
twas_sim
Public
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
python gwas simulation eqtl twas
Shell
•4•29•1•0•Updated Jun 18, 2023Jun 18, 2023
FactorGo_analysis
Public
Analysis code for FactorGo project
R
•0•1•0•0•Updated Mar 24, 2023Mar 24, 2023
stroke_twas
Public
0•0•0•0•Updated Dec 8, 2022Dec 8, 2022
.github
Public
0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
twas_sim_paper
Public
0•0•0•0•Updated Sep 14, 2022Sep 14, 2022
MA-FOCUS-data-code
Public
Data and code Availability for MA-FOCUS Project
R
•1•1•0•0•Updated Jun 21, 2022Jun 21, 2022