Dzint/image simulation

app/pywmtk/pywmtk.cpp

@@ -11,10 +11,6 @@
 // components
 #include "../components_include.hpp"
 
-// std::map<std::string, std::function<void(nlohmann::json)>> components_map;
-//// include auto-generated map
-//#include "../components_map.hpp"
-
 namespace py = pybind11;
 using namespace pybind11::literals;
 
@@ -47,16 +43,5 @@ void wmtk_wrapper(const py::dict& obj)
 PYBIND11_MODULE(pywmtk, m, py::mod_gil_not_used())
 {
     m.doc() = "Python bindings for the Wildmeshing-Toolkit"; // optional module docstring
-    // m.def("get_metrics", &meme::get_metrics, "Get mesh metrics");
-    // m.def("get_metric_names", &meme::get_metrics_names, "Get names for all mesh metrics");
-    // m.def("get_metrics_per_tri", &meme::get_metrics_per_tri, "Get mesh metrics per triangle");
-    // m.def(
-    //     "get_metric_names_per_tri",
-    //     &meme::get_metrics_names_per_tri,
-    //     "Get names for all per-triangle metrics");
-    // m.def(
-    //     "get_relative_edge_lenghts",
-    //     &meme::get_relative_edge_lengths,
-    //     "Get edge lengths realtive to bbox diagonal");
     m.def("wmtk", &wmtk_wrapper, "Wildmeshing-Toolkit application");
 }

cmake/recipes/libigl.cmake

@@ -12,7 +12,7 @@ CPMAddPackage(
     GIT_TAG 3ea7f9480967fcf6bf02ce9b993c0ea6d2fc45f6
     OPTIONS
         LIBIGL_PREDICATES ON
-        LIBIGL_COPYLEFT_TETGEN ON
+        # LIBIGL_COPYLEFT_TETGEN ON
 )
 # include(eigen)
 FetchContent_MakeAvailable(libigl)

cmake/wmtk_data.cmake

@@ -16,7 +16,7 @@ ExternalProject_Add(
     SOURCE_DIR ${WMTK_DATA_ROOT}
 
     GIT_REPOSITORY https://github.com/wildmeshing/data2.git
-    GIT_TAG a97b2a974e80cc288624f86c9cc03eae7f050c4f
+    GIT_TAG f2bd8ed5e8af5a125ee4d92cd0af8f32cec60e02
 
     CONFIGURE_COMMAND ""
     BUILD_COMMAND ""

components/image_simulation/wmtk/components/image_simulation/AnnotationsTet.cpp

@@ -579,22 +579,31 @@ void ImageSimulationMesh::resolve_intersections(const std::vector<CellTag>& inte
     m_envelope.reset();
 }
 
-void ImageSimulationMesh::replace_tags(const std::vector<CellTag>& tags_in, const CellTag& tag_out)
+void ImageSimulationMesh::replace_tags(
+    const std::vector<CellTag>& tags_in,
+    const std::vector<CellTag>& tags_out)
 {
     for (const Tuple& t : get_tets()) {
         CellTag& tags = m_tet_attribute[t.tid(*this)].tags;
-        bool found_some = false;
-        for (const CellTag& tag : tags_in) {
-            if (set_includes(tags, tag)) {
-                found_some = true;
-                // remove tag from tags
-                for (const size_t t : tag) {
-                    tags.erase(t);
+        std::vector<bool> found_tags(tags_in.size(), false);
+        for (size_t i = 0; i < tags_in.size(); ++i) {
+            if (set_includes(tags, tags_in[i])) {
+                found_tags[i] = true;
+            }
+        }
+        // remove "tags_in" from tags
+        for (size_t i = 0; i < tags_in.size(); ++i) {
+            if (found_tags[i]) {
+                for (const int64_t tt : tags_in[i]) {
+                    tags.erase(tt);
                 }
             }
         }
-        if (found_some) {
-            tags.insert(tag_out.begin(), tag_out.end());
+        // add "tags_out" to tags
+        for (size_t i = 0; i < tags_out.size(); ++i) {
+            if (found_tags[i]) {
+                tags.insert(tags_out[i].begin(), tags_out[i].end());
+            }
         }
     }
 

components/image_simulation/wmtk/components/image_simulation/AnnotationsTri.cpp

@@ -535,22 +535,29 @@ void ImageSimulationMeshTri::resolve_intersections(const std::vector<CellTag>& i
 
 void ImageSimulationMeshTri::replace_tags(
     const std::vector<CellTag>& tags_in,
-    const CellTag& tag_out)
+    const std::vector<CellTag>& tags_out)
 {
     for (const Tuple& t : get_faces()) {
         CellTag& tags = m_face_attribute[t.fid(*this)].tags;
-        bool found_some = false;
-        for (const CellTag& tag : tags_in) {
-            if (set_includes(tags, tag)) {
-                found_some = true;
-                // remove tag from tags
-                for (const size_t t : tag) {
-                    tags.erase(t);
+        std::vector<bool> found_tags(tags_in.size(), false);
+        for (size_t i = 0; i < tags_in.size(); ++i) {
+            if (set_includes(tags, tags_in[i])) {
+                found_tags[i] = true;
+            }
+        }
+        // remove "tags_in" from tags
+        for (size_t i = 0; i < tags_in.size(); ++i) {
+            if (found_tags[i]) {
+                for (const int64_t tt : tags_in[i]) {
+                    tags.erase(tt);
                 }
             }
         }
-        if (found_some) {
-            tags.insert(tag_out.begin(), tag_out.end());
+        // add "tags_out" to tags
+        for (size_t i = 0; i < tags_out.size(); ++i) {
+            if (found_tags[i]) {
+                tags.insert(tags_out[i].begin(), tags_out[i].end());
+            }
         }
     }
 

components/image_simulation/wmtk/components/image_simulation/CMakeLists.txt

@@ -13,9 +13,6 @@ set(SRC_FILES
     ImageSimulationMesh.cpp
 	ImageSimulationMesh.h
 
-	extract_soup.hpp
-	extract_soup.cpp
-
 	EmbedSurface.hpp
 	EmbedSurface.cpp
 
@@ -54,7 +51,6 @@ target_link_libraries(wmtk_${COMPONENT_NAME} PUBLIC
 	wmtk::shortest_edge_collapse
 	VolumeRemesher::VolumeRemesher
 	jse::jse
-	igl_copyleft::tetgen
 )
 
 ######################