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Pull requests: NCATSTranslator/Babel

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Pull requests list

Babel 1.18
#937 opened Jul 13, 2026 by gaurav Collaborator • Draft
2 tasks
Babel v1.18
Type foods from their NCIt classification, beyond DrugBank (#935)
#936 opened Jul 13, 2026 by gaurav Collaborator • Draft
clique-diff: report the incoming side of cross-compendium moves
#915 opened Jul 10, 2026 by gaurav Collaborator Loading…
Write UberGraph concords in a deterministic order
#901 opened Jul 9, 2026 by gaurav Collaborator • Draft
5 tasks
1
Document what Ubergraph's SPARQL results actually contain
#899 opened Jul 9, 2026 by gaurav Collaborator Loading…
Compare each build's prefix counts against the previous release
#889 opened Jul 2, 2026 by gaurav Collaborator Loading… Babel v1.18
1
3
Activate glom's MONDO close-match guard, with concord-reader symmetry tests
#888 opened Jul 2, 2026 by gaurav Collaborator Loading… Not urgent
1
feat: add unstable manual compendium for hand-curated cliques, EUPATH seed term, and source docs documentation Improvements or additions to documentation enhancement New feature or request new data source A new data source to include in Babel testing Related to the test suite or testing infrastructure
#887 opened Jul 1, 2026 by SkyeAv Member Loading… Babel v1.19
@SkyeAv
1
drugchemical: record dropped conflation pairs to a retained exclusion report (#754)
#874 opened Jun 24, 2026 by gaurav Collaborator • Draft
fixed issue #827 with DRUGBANK:DB10626 preferred name
#872 opened Jun 23, 2026 by hyi Contributor Loading… Babel v1.19
1
Estimate drugprotein
#848 opened Jun 9, 2026 by gaurav Collaborator • Draft
Add protein/chemical overlap report
#830 opened Jun 4, 2026 by gaurav Collaborator • Draft
docs: add temporary plan for centralizing MeSH tree-number partitioning
#812 opened May 29, 2026 by gaurav Collaborator • Draft
Unify UMLS semantic-type to Biolink-class mappings into one registry
#804 opened May 29, 2026 by gaurav Collaborator Loading…
Add EMAPA as an anatomy source
#781 opened May 20, 2026 by gaurav Collaborator Loading…
5 of 8 tasks
Babel v1.19
3
Pipeline tests for labels
#755 opened May 13, 2026 by gaurav Collaborator • Draft
Add config/rule drift checks for all semantic-type id lists
#728 opened Apr 22, 2026 by gaurav Collaborator Loading… Improved testing
2
Add near-end-to-end tests for write_compendium() label selection
#726 opened Apr 18, 2026 by gaurav Collaborator Loading… Improved testing
5
Add conflation taxon report
#697 opened Mar 17, 2026 by gaurav Collaborator • Draft Improved testing
1
Add UMLS report generator
#683 opened Mar 5, 2026 by gaurav Collaborator • Draft
6
Add generic SQL report system for drop-in .sql report files
#671 opened Feb 24, 2026 by gaurav Collaborator • Draft
1 task
Improved testing
10
Add contributors
#615 opened Nov 7, 2025 by gaurav Collaborator • Draft
1
Feat/use rust for datacollect
#588 opened Sep 25, 2025 by gaurav Collaborator • Draft
2
Bulk normalize
#564 opened Sep 9, 2025 by gaurav Collaborator • Draft
1
Add CLI normalizer
#503 opened Aug 28, 2025 by gaurav Collaborator • Draft
1
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