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fix readme CI #188: Commit 9be855d pushed by Robaina
21s main
main
21s
fix nb CI #187: Commit ecf0628 pushed by Robaina
18s main
main
18s
add case studies CI #186: Commit 7a4ef0f pushed by Robaina
18s main
main
18s
Merge pull request #105 from Robaina/add-mcp-server CI #185: Commit 696063e pushed by Robaina
22s main
main
22s
Format mcp/ with black to satisfy CI quality check CI #184: Commit 17c1a98 pushed by Robaina
18s add-mcp-server
add-mcp-server
18s
Add Pynteny MCP server (mcp/) for LLM agents CI #183: Commit 6df62a7 pushed by Robaina
18s add-mcp-server
add-mcp-server
18s
Merge pull request #104 from Robaina/release-1.3.0 CI #182: Commit cc1b192 pushed by Robaina
19s v1.3.0
v1.3.0
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Merge pull request #104 from Robaina/release-1.3.0 CI #181: Commit cc1b192 pushed by Robaina
21s main
main
21s
Release 1.3.0: add best_hmm_wins option for paralog cross-hits CI #180: Commit f769947 pushed by Robaina
20s release-1.3.0
release-1.3.0
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Merge pull request #103 from Robaina/fix-issue96-paralog-crosshits CI #179: Commit 2f88af4 pushed by Robaina
16s main
main
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Add --best_hmm_wins to fix paralog cross-hits dropping syntenic block… CI #178: Commit 0667992 pushed by Robaina
22s fix-issue96-paralog-crosshits
fix-issue96-paralog-crosshits
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Merge pull request #102 from Robaina/drop-conda-dev-env CI #177: Commit 4875587 pushed by Robaina
21s main
main
21s
Merge pull request #101 from Robaina/docs-pypi-live CI #176: Commit 491974d pushed by Robaina
19s main
main
19s
Remove conda dev environment and devcontainer (pip-only) CI #175: Commit 43f94a6 pushed by Robaina
17s drop-conda-dev-env
drop-conda-dev-env
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docs: pynteny is on PyPI - lead with pip install pynteny CI #174: Commit 3de2fd7 pushed by Robaina
18s docs-pypi-live
docs-pypi-live
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Merge pull request #100 from Robaina/pypi-trusted-publishing CI #173: Commit e3b75c5 pushed by Robaina
19s v1.2.0
v1.2.0
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Merge pull request #100 from Robaina/pypi-trusted-publishing CI #172: Commit e3b75c5 pushed by Robaina
18s main
main
18s
Add PyPI Trusted Publishing workflow; bump version to 1.2.0 CI #171: Commit 3284653 pushed by Robaina
17s pypi-trusted-publishing
pypi-trusted-publishing
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Merge pull request #99 from Robaina/pip-only-docs-cleanup CI #170: Commit fe08e2d pushed by Robaina
19s main
main
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docs: make Pynteny pip-only (remove bioconda) and drop conda recipes CI #169: Commit febbf8c pushed by Robaina
21s pip-only-docs-cleanup
pip-only-docs-cleanup
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Merge pull request #98 from Robaina/issue97-drop-conda-pyhmmer-pyrodigal CI #168: Commit 81240cb pushed by Robaina
20s main
main
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docs: update install instructions for pip-only Pynteny CI #167: Commit c94f58f pushed by Robaina
21s issue97-drop-conda-pyhmmer-pyrodigal
issue97-drop-conda-pyhmmer-pyrodigal
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Fix pandas 3.0 compatibility: replace DataFrame.applymap with fillna CI #166: Commit b9c4c5b pushed by Robaina
21s issue97-drop-conda-pyhmmer-pyrodigal
issue97-drop-conda-pyhmmer-pyrodigal
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CI: switch tests to pure pip; fix black + biopython 1.87 compatibility CI #165: Commit 00a6d81 pushed by Robaina
20s issue97-drop-conda-pyhmmer-pyrodigal
issue97-drop-conda-pyhmmer-pyrodigal
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Drop conda dependency: replace hmmer/prodigal/seqkit with pyhmmer/pyr… CI #164: Commit d83a2e5 pushed by Robaina
19s issue97-drop-conda-pyhmmer-pyrodigal
issue97-drop-conda-pyhmmer-pyrodigal
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